Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JT31_RS09000 Genome accession   NZ_CP009451
Coordinates   1976907..1978289 (-) Length   460 a.a.
NCBI ID   WP_038475758.1    Uniprot ID   A0A089RE23
Organism   Cedecea neteri strain SSMD04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971907..1983289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT31_RS08990 (JT31_09215) ettA 1973250..1974917 (+) 1668 WP_038475753.1 energy-dependent translational throttle protein EttA -
  JT31_RS08995 (JT31_09220) nadR 1975628..1976860 (-) 1233 WP_038475755.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  JT31_RS09000 (JT31_09225) radA 1976907..1978289 (-) 1383 WP_038475758.1 DNA repair protein RadA Machinery gene
  JT31_RS09005 (JT31_09230) serB 1978304..1979281 (-) 978 WP_038475761.1 phosphoserine phosphatase -
  JT31_RS09010 (JT31_09235) - 1979431..1980066 (+) 636 WP_038475764.1 YtjB family periplasmic protein -
  JT31_RS09015 (JT31_09240) lplA 1980141..1981157 (+) 1017 WP_038475768.1 lipoate--protein ligase LplA -
  JT31_RS09020 (JT31_09245) yjjJ 1981154..1982482 (-) 1329 WP_038475772.1 type II toxin-antitoxin system HipA family toxin YjjJ -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49521.13 Da        Isoelectric Point: 7.1552

>NTDB_id=129345 JT31_RS09000 WP_038475758.1 1976907..1978289(-) (radA) [Cedecea neteri strain SSMD04]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVNRVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICAIADEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKIPEGMLVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=129345 JT31_RS09000 WP_038475758.1 1976907..1978289(-) (radA) [Cedecea neteri strain SSMD04]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCTCAGGTTGCCCGCAACGAGCGTCTTTCCGGCT
ACGCCGGGAGCGCGGGCGTCAACCGTGTTCAAAAGCTTTCAGACATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGT
TTTAAAGAATTTGACCGCGTGCTGGGCGGCGGCGTGGTGCCGGGAAGCGCTATCTTAATCGGCGGCAACCCAGGTGCGGG
GAAATCGACGCTGCTGCTGCAGACGCTTTGCAAGCTGAGCGAGCAAATGAAAACCCTGTACGTCACCGGCGAGGAGTCAC
TCCAGCAGGTGGCGATGCGTGCGCACCGCCTGGGTCTGCCGACGCAAAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTGCGATCGCCGATGAAGAACAGCCGAAGCTGATGGTGATCGACTCGATCCAGGTGATGCATATGGCGGACGT
GCAGTCTTCGCCGGGCAGCGTGGCCCAGGTGCGTGAAACCGCAGCCTACCTGACGCGCTTTGCGAAGACGAAAGGTGTGG
CTATCGTGATGGTCGGGCACGTGACCAAAGATGGCTCCCTGGCGGGGCCAAAGGTTCTCGAGCACTGTATCGACTGCTCG
GTAATGCTCGACGGCGATGCCGATTCTCGCTTCCGTACTCTGCGTAGTCATAAAAACCGCTTTGGCGCGGTGAATGAATT
GGGCGTGTTCGCGATGACCGAGCAGGGGCTGCGTGAAGTGAGCAACCCGTCAGCCATCTTCCTGAGCCGCGGCGATGAAG
TGACGCCGGGCAGCTCGGTGATGGTGGTCTGGGAAGGAACTCGCCCGCTGCTGGTAGAGATTCAGGCGCTGGTGGATCAG
TCGATGATGTCCAACCCTCGCCGCGTGGCCGTGGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCCGTGCTGCACCG
TCACGGTGGCCTGCAAATGGCCGACCAGGACGTGTTCGTGAACGTGGTCGGTGGCGTAAAAGTTACCGAAACCAGCGCCG
ATCTGGCGCTGCTGCTGGCGATGGTTTCCAGCTTACGGGACAGAGCCTTGCCGCAGGATTTAGTGGTGTTTGGCGAAGTC
GGGCTGGCCGGCGAAATCCGCCCGGTACCCAGCGGCCAGGAACGCATTTCCGAAGCGGCAAAACACGGCTTTAAGCGTGC
GATTGTGCCGCAGGCCAACGTACCGAAAAAAATTCCTGAAGGGATGCTGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTATTCGACGACTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089RE23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43
  radA Streptococcus mitis NCTC 12261

43.202

99.13

0.428

Multiple sequence alignment