Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   FORC16_RS04110 Genome accession   NZ_CP011775
Coordinates   868519..871860 (+) Length   1113 a.a.
NCBI ID   WP_414499207.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 863519..876860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS04085 (FORC16_0783) sucC 863643..864809 (+) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -
  FORC16_RS04090 (FORC16_0784) sucD 864809..865681 (+) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  FORC16_RS04095 (FORC16_0785) znuB 865764..866549 (-) 786 WP_060532247.1 zinc ABC transporter permease subunit ZnuB -
  FORC16_RS04100 (FORC16_0786) znuC 866542..867327 (-) 786 WP_011078269.1 zinc ABC transporter ATP-binding protein ZnuC -
  FORC16_RS04105 (FORC16_0787) znuA 867409..868284 (+) 876 WP_060532245.1 zinc ABC transporter substrate-binding protein ZnuA -
  FORC16_RS04110 (FORC16_0788) tfoS 868519..871860 (+) 3342 WP_414499207.1 AraC family transcriptional regulator Regulator
  FORC16_RS04115 - 872647..872874 (+) 228 WP_011149798.1 FeoA family protein -
  FORC16_RS04120 (FORC16_0789) feoB 872874..875150 (+) 2277 WP_060532241.1 Fe(2+) transporter permease subunit FeoB -
  FORC16_RS04125 (FORC16_0790) - 875147..875377 (+) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  FORC16_RS04130 (FORC16_0791) - 875486..875914 (-) 429 WP_060532239.1 HIT family protein -

Sequence

Protein


Download         Length: 1113 a.a.        Molecular weight: 124344.23 Da        Isoelectric Point: 5.2203

>NTDB_id=129316 FORC16_RS04110 WP_414499207.1 868519..871860(+) (tfoS) [Vibrio vulnificus strain FORC_016]
MDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLEYPSEQVAFHQGSFWTFVANEV
FQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQNNQSSYVYINDAKRVLSKWVL
GTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIMIGESHVLSMTETNQEYWIGTE
HGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRKFERLNNITEEKASRFNGNITK
IVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDTNQYKLRSFDLPSYLKGKEIDF
VSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRTDHGAYVLENDKIRFERNTQSF
GESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDVSGIWMVSSIGLSFYNFDGELRKHFGSRSG
IMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDDQVANIGQKEWQLPELAYGSAI
SFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVRFTVLHPWYQTTMAMAIFVLLI
VALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVDNVARSLRQSVDALLSKPSVEP
ASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELNKSGVQVHISGESDDYRVAVGQFNLDVIFN
SVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSSGVESTKVDTAIEKLPALVEQSGGRLSLFSSAE
RNKIEILWPKAVESLINDEEPSIFVDSVEPSPVTEVSSEGAPSPEQLWLAKVEAMVAEHYTNPEFGTAMAAKKLYVSERS
LQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFGVPPSKFASDALESE

Nucleotide


Download         Length: 3342 bp        

>NTDB_id=129316 FORC16_RS04110 WP_414499207.1 868519..871860(+) (tfoS) [Vibrio vulnificus strain FORC_016]
TTGGACGGAAACTCTGCCATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGT
TGGTGGTGATGGTGGTTTGTGGATCCACGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAAC
GTGGCAGCCTTCTAGAGTACCCTTCCGAGCAAGTGGCCTTTCATCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTC
TTCCAAACATACCCTAATCAGAAGCGTCAGTTAGCGTTTAGCTTAAACCCAGGGGCAGAAATCAGAAAAATTGGCAGCTC
AGATGGCCACATTTGGGTGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCT
TACTCTCGTTGTATCAAAACAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTC
GGTACCACATCGGGAGCTTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAA
ACTGTACTTTTCTCCGACTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGA
CTCAAAAAAACATCATGATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAA
CATGGTCTGTACAGTTACTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGA
TAATCGAAAAATTTACTCGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACT
CTCTGTTTGGCCGAAAATTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAA
ATTGTCTATGCATCAGATGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATA
CAGCCGTGTGCGTTTGCCGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTC
TGTATATTTACGACACGAATCAGTACAAACTTCGATCGTTCGATTTGCCAAGTTACCTTAAAGGTAAAGAGATTGATTTT
GTTTCGGTCAGCCCTCAAGGCAAGGTTTGGATAAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGACGCTT
CCAAGATTATGGCGATCGGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCC
CGTTAATCGTAAGAACCGATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTT
GGTGAAAGTGTCGATATTGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGTATCTATCGTAAAGATCC
CACAGAAAAAACGTTAGGAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGTTAGCGGCA
TTTGGATGGTGAGTTCAATTGGCCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGCTCGGGC
ATTATGAGTAATGAGTTCGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGG
TTCAAAATATGGCCTGGTATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCC
AAGTTCGTATTGATGATCAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATC
AGTTTTGGCCTCGGCGTGATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCAC
AGAAGCAGGACAAGTCTCTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGG
ATTCCGTGCAAGTTCGCTTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTTATC
GTAGCGTTGGGCGGCTTAGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAATCGGGAGTTAACGGCACTGGTTGC
ATTGAAGACCAATCAATTGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTA
GAAATTTGCTGGTTGACAATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCCATCGGTTGAACCT
GCCTCAGAATATCAGGAACATCAAATGCGCATAGCAATGCTTTTGGAAGAGTTAAAAAGCTCGCCCAGCGATGGAACTGA
CGGGTATCTGCAAAACTTTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCG
GTGTTCAGGTGCACATCTCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAAT
AGTGTTTTTGCAAGTGTGTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGT
TGAAGTGTCGTTTATTGATTTTGGCCAGCCGTTTAGTACAAGCACGGAAGCCGAGGATAGCTCTGGTGTTGAGTCGACAA
AAGTCGATACTGCAATCGAGAAGCTTCCAGCTTTAGTTGAACAAAGCGGTGGACGCTTAAGCTTGTTCAGTAGCGCTGAG
CGAAACAAGATCGAAATACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGATGAAGAGCCAAGCATCTTTGTTGATTC
AGTCGAACCGTCTCCAGTTACGGAAGTCTCATCCGAAGGCGCTCCGTCACCAGAGCAGCTATGGTTGGCGAAGGTCGAGG
CTATGGTGGCAGAGCATTATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAAAAGCTCTATGTTTCTGAGCGCAGC
TTACAGCGACGGTTTAAATCAGCGAGCTCTCGTACATTTACGGATTACCTCACGGAAGTACGTTTAGAAAAAGCATGCGA
AAGTTTGTTGGCTGGTGAAAAAGTGGTCGATGTGGCTTTCGCATCGGGATTTAATGATCCTTCTTACTTTAGTCAACGTT
TTAAACTGTACTTTGGTGTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1031-1105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.697

100

0.4

Multiple sequence alignment