Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PODO_RS14995 Genome accession   NZ_CP009428
Coordinates   3453031..3454782 (-) Length   583 a.a.
NCBI ID   WP_038571195.1    Uniprot ID   -
Organism   Paenibacillus odorifer strain DSM 15391     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448031..3459782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PODO_RS14980 (PODO_15360) - 3448588..3449523 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  PODO_RS14985 (PODO_15365) - 3449614..3451176 (+) 1563 WP_038571189.1 ABC transporter substrate-binding protein -
  PODO_RS14990 (PODO_15370) rcrQ 3451271..3453031 (-) 1761 WP_038571192.1 ABC transporter ATP-binding protein Regulator
  PODO_RS14995 (PODO_15375) rcrP 3453031..3454782 (-) 1752 WP_038571195.1 ABC transporter ATP-binding protein Regulator
  PODO_RS15000 (PODO_15380) - 3454902..3455957 (-) 1056 WP_080742500.1 HAMP domain-containing sensor histidine kinase -
  PODO_RS15005 (PODO_15385) - 3455954..3456628 (-) 675 WP_036677195.1 response regulator transcription factor -
  PODO_RS15010 (PODO_15390) - 3456953..3457918 (+) 966 WP_036677191.1 aldo/keto reductase -
  PODO_RS15015 (PODO_15395) - 3457955..3458806 (+) 852 Protein_2986 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64018.55 Da        Isoelectric Point: 7.7377

>NTDB_id=129229 PODO_RS14995 WP_038571195.1 3453031..3454782(-) (rcrP) [Paenibacillus odorifer strain DSM 15391]
MVTILKYLKPKEWTLIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVSIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKTNRLGEVEFKKVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=129229 PODO_RS14995 WP_038571195.1 3453031..3454782(-) (rcrP) [Paenibacillus odorifer strain DSM 15391]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGACCCTAATCGGTATCAGCATCCTGTTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGTTTAGCCACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACGAATGACATTACACAAGTGCAAATGCTAATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCAATTGGGGTATTGATTCTTATTGTCAGCATAGTGATCGTGCTTGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAAAATCTTACAGGCCTTCGTGTCATTCGTGCTTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTTGCCAACAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCTAAGACAAATCGGTTGGGTGAAGTCGAATTCAAAAAAGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAGGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTGGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACCGTAGTGAACCTGATCCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GGTATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTCGGCGACAATGGCAGTGATCTGTCCTCTGATGTTGTAGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAGCAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTGATCTTCGACGATTCCTTCTCAGC
ACTTGATTATAAGACGGATCGCAAATTGCGTAGTGAATTGAAGAAGAAATCCAGCGGTACGACGATACTAATCGTTGCGC
AGCGGATCGGTACAATCAAAGACGCAGATAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(357-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.181

100

0.533

Multiple sequence alignment