Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PODO_RS14990 Genome accession   NZ_CP009428
Coordinates   3451271..3453031 (-) Length   586 a.a.
NCBI ID   WP_038571192.1    Uniprot ID   -
Organism   Paenibacillus odorifer strain DSM 15391     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3446271..3458031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PODO_RS31910 - 3447305..3447442 (-) 138 WP_244886339.1 hypothetical protein -
  PODO_RS14975 (PODO_15355) - 3447615..3448574 (+) 960 WP_038574490.1 ABC transporter permease subunit -
  PODO_RS14980 (PODO_15360) - 3448588..3449523 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  PODO_RS14985 (PODO_15365) - 3449614..3451176 (+) 1563 WP_038571189.1 ABC transporter substrate-binding protein -
  PODO_RS14990 (PODO_15370) rcrQ 3451271..3453031 (-) 1761 WP_038571192.1 ABC transporter ATP-binding protein Regulator
  PODO_RS14995 (PODO_15375) rcrP 3453031..3454782 (-) 1752 WP_038571195.1 ABC transporter ATP-binding protein Regulator
  PODO_RS15000 (PODO_15380) - 3454902..3455957 (-) 1056 WP_080742500.1 HAMP domain-containing sensor histidine kinase -
  PODO_RS15005 (PODO_15385) - 3455954..3456628 (-) 675 WP_036677195.1 response regulator transcription factor -
  PODO_RS15010 (PODO_15390) - 3456953..3457918 (+) 966 WP_036677191.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64541.78 Da        Isoelectric Point: 6.5784

>NTDB_id=129228 PODO_RS14990 WP_038571192.1 3451271..3453031(-) (rcrQ) [Paenibacillus odorifer strain DSM 15391]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTATGRVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=129228 PODO_RS14990 WP_038571192.1 3451271..3453031(-) (rcrQ) [Paenibacillus odorifer strain DSM 15391]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTCCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTTTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCGGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCAATTTCTTATTATAATAATTCTACAACCGGTGACATTCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGTCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCTTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTCGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTCGAGTTCCTCGATGCTGATGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCAACGGGCAGAGTGGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGCGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATTCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCGGAGCTTTATAATAGCCAATTTGATCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment