Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M444_RS27265 Genome accession   NZ_CP011664
Coordinates   6274919..6275548 (-) Length   209 a.a.
NCBI ID   WP_037791183.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6269919..6280548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS27245 (M444_27225) aceB 6270588..6272216 (-) 1629 WP_008738040.1 malate synthase A -
  M444_RS27250 (M444_27230) - 6272520..6273146 (-) 627 WP_008738039.1 nucleotidyltransferase family protein -
  M444_RS27255 (M444_27235) - 6273098..6273325 (-) 228 WP_008738038.1 hypothetical protein -
  M444_RS27260 (M444_27240) - 6273412..6274899 (+) 1488 WP_037798443.1 PLP-dependent aminotransferase family protein -
  M444_RS27265 (M444_27245) vraR 6274919..6275548 (-) 630 WP_037791183.1 response regulator transcription factor Regulator
  M444_RS27270 (M444_27250) - 6275548..6276741 (-) 1194 WP_008738035.1 sensor histidine kinase -
  M444_RS27275 (M444_27255) - 6276875..6277978 (+) 1104 WP_008738034.1 ABC transporter permease -
  M444_RS27280 (M444_27260) - 6277975..6278658 (+) 684 WP_008738033.1 ABC transporter ATP-binding protein -
  M444_RS27285 (M444_27265) - 6278765..6279568 (-) 804 WP_008738030.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22012.35 Da        Isoelectric Point: 5.6743

>NTDB_id=129200 M444_RS27265 WP_037791183.1 6274919..6275548(-) (vraR) [Streptomyces sp. Mg1]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAASEPVDVVLMDLQFGSGMHGSAATRLITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=129200 M444_RS27265 WP_037791183.1 6274919..6275548(-) (vraR) [Streptomyces sp. Mg1]
ATGACGATCCGGCTGCTGCTGGCCGACGACCACCCGGTGGTACGGGCGGGGCTGCGCGCGGTGCTGGACACCGAACCGGA
CTTCGCGGTGGTCGCGGAGGCGGCGACGGCCGAGCGGGCGGTGGAGCTGGCGGCGTCGGAGCCGGTGGACGTGGTGCTGA
TGGACCTCCAGTTCGGCTCCGGCATGCACGGCTCGGCGGCGACCCGGCTGATCACGGCCCGGCCGGGGGCGCCCCGGGTG
CTGGTCCTGACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGCGCCTCGGGCTACCTCCTCAAGGA
CGCCCCGCCGGAGGAACTGGCGGCGGCGGTCCGCACGGCGGCGGCCGGCCAGTCGGCCCTGGCCCCGGCGGTGGCCCTGC
GCCTGATGGACCGGATGCGCACCCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTCCTCCAACTGGTCGCGGACGGC
CTGTCGAACCAGCAGATCTCGAAGGAACTCTTCCTCAGCCAGGCCACGGTCAAATCCCACCTGGTGCACATCTACGCCAA
ACTCGGCGTCGACTCCCGCACCTCGGCCGTGGCCACAGCCGCCACCCGCCGCCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383