Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   M444_RS24600 Genome accession   NZ_CP011664
Coordinates   5614822..5617017 (+) Length   731 a.a.
NCBI ID   WP_199781028.1    Uniprot ID   A0ABZ1RJT0
Organism   Streptomyces sp. Mg1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5609822..5622017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS24575 (M444_24560) - 5610291..5610524 (-) 234 WP_008739890.1 Lrp/AsnC ligand binding domain-containing protein -
  M444_RS24580 (M444_24565) - 5610770..5611753 (+) 984 WP_037792123.1 thiamine-phosphate kinase -
  M444_RS24585 (M444_24570) thiD 5611750..5612553 (+) 804 WP_008739893.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  M444_RS24590 (M444_24575) rpmB 5612687..5612872 (-) 186 WP_007266795.1 50S ribosomal protein L28 -
  M444_RS24595 (M444_24580) - 5613122..5614795 (+) 1674 WP_037798195.1 DAK2 domain-containing protein -
  M444_RS24600 (M444_24585) recG 5614822..5617017 (+) 2196 WP_199781028.1 ATP-dependent DNA helicase RecG Machinery gene
  M444_RS24605 (M444_24590) rsmD 5617079..5617657 (+) 579 WP_008739908.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M444_RS24610 (M444_24595) coaD 5617672..5618151 (+) 480 WP_008739910.1 pantetheine-phosphate adenylyltransferase -
  M444_RS24615 (M444_24600) - 5618256..5619323 (+) 1068 WP_037792125.1 ATP synthase F0 subunit B -
  M444_RS24620 (M444_24605) - 5619401..5620099 (+) 699 WP_229895075.1 DUF177 domain-containing protein -
  M444_RS24625 (M444_24610) rpmF 5620102..5620275 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  M444_RS24630 (M444_24615) rnc 5620295..5621128 (+) 834 WP_008739919.1 ribonuclease III -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 79107.94 Da        Isoelectric Point: 6.2676

>NTDB_id=129188 M444_RS24600 WP_199781028.1 5614822..5617017(+) (recG) [Streptomyces sp. Mg1]
MEHVPALDEDLKKTLGPATAKVLAEQLGLHTALDLLHHYPRKYAERGELTALTELADQLDEHVTVVAQVADARILTFNGG
RGKRLEVTITDGNGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVGMFNRKLQLSHPAYEPLGADASDQDAATAFAGRLIP
IYPACAKLESWKIAKCVDAVLPSARETVDPLPPALREGRGLVPLTEALLKIHRPATKADVEDARQRLKWDEAFVLQVALA
RRRRADSQLPAVPRRPVPGGLLDAFDAKLPFTLTEGQQTVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDC
GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVVLLTGSMGMPARRKALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDK
PHFLARAWERVREEVGKGHQAYVVCPRIGDEETADPKKKSAEADGDKRPPLAVLEIADELRGGALAGLSVEVLHGRMDPA
DKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMHEASPARARL
AAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEVIAQAREEATRVVADDPELERLPGLKLALDALL
DTEREQYLEKG

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=129188 M444_RS24600 WP_199781028.1 5614822..5617017(+) (recG) [Streptomyces sp. Mg1]
ATGGAACACGTGCCCGCGCTCGACGAAGACCTCAAGAAGACGCTCGGCCCCGCCACCGCCAAGGTGCTGGCCGAACAGCT
CGGCCTGCACACGGCCCTGGACCTGCTCCACCACTACCCCCGCAAGTACGCGGAGCGCGGCGAGCTGACGGCGCTGACCG
AACTCGCCGACCAGCTCGACGAGCACGTGACGGTGGTGGCGCAGGTCGCGGACGCCCGGATCCTCACCTTCAACGGCGGC
CGCGGCAAACGCCTCGAAGTCACCATCACCGACGGCAACGGCCGCCTCCAGCTGGTCTTCTTCGGCGCCGGGGTCCACAA
ACCGCACAAGGAACTGCTGCCCGGGACCCGCGCCATGTTCGCGGGCAAGGTCGGCATGTTCAACCGCAAGCTCCAGCTGT
CCCACCCGGCCTACGAGCCCCTCGGCGCGGACGCCTCCGACCAGGACGCCGCCACCGCCTTCGCCGGCCGGCTCATCCCG
ATCTACCCGGCCTGCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTGCGTGGACGCCGTCCTGCCCAGCGCCCGGGAGAC
CGTGGACCCGCTGCCGCCCGCCCTGCGCGAGGGCCGCGGCCTGGTCCCGCTCACCGAGGCCCTGCTGAAGATCCACCGCC
CGGCCACCAAGGCCGATGTCGAGGACGCCCGCCAGCGCCTGAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTGGCC
CGCCGCCGCCGCGCCGACTCCCAGCTCCCGGCCGTCCCCCGCCGCCCCGTCCCCGGCGGCCTGCTCGACGCCTTCGACGC
CAAACTCCCCTTCACCCTCACCGAAGGCCAGCAGACCGTCTCGAAGGAGATCTTCGACGACCTCGCCACCGAGCACCCCA
TGCACCGCCTCCTCCAGGGCGAAGTCGGCAGCGGGAAGACGATGGTGGCGCTGCGGGCCATGCTCGCCGTCGTGGACTGC
GGCGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCGCAGCAGCACCACCGGTCCATCACCGAGATGATGGGCGA
ACTCGCCGAAGGCGGCATGCTCGGGGGCTCGGACCAGGGCACCAAAGTCGTGCTGCTCACCGGGTCCATGGGGATGCCTG
CGCGCCGCAAGGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACCCACGCCCTGATCGAGGACAAG
GTGCAGTTCCACGACCTCGGCCTGGTCGTGGTGGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGCGCTGCGGTC
CAAGGGGAAGCAGCCCCCGCACCTGCTCGTCATGACCGCGACCCCGATCCCGCGGACCGTCGCCATGACCGTCTTCGGCG
ACCTGGAGACCTCCGTCCTCGACCAGCTGCCGGCCGGGCGCTCCCCGATCGCCACCCACGTGGTGCCCGCCAAGGACAAG
CCGCACTTCCTGGCCCGGGCCTGGGAGCGGGTCCGCGAGGAGGTCGGGAAGGGCCACCAGGCCTACGTGGTCTGCCCGCG
GATCGGCGACGAAGAGACCGCCGACCCCAAGAAGAAGTCCGCCGAGGCCGACGGGGACAAGCGGCCGCCGCTCGCCGTCC
TGGAGATCGCCGACGAACTGCGCGGCGGGGCACTGGCAGGGCTGAGCGTCGAGGTGCTCCACGGCCGGATGGACCCCGCC
GACAAGGACGACGTCATGCGCCGGTTCGCCGCCGGCGAGGTCAAGGTGCTGGTCGCCACCACCGTCATCGAGGTCGGGGT
GAACGTCCCCAACTCCACCGTCATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCC
GCGTCGGCCGAGGCTCCGCGCCCGGACTGTGCCTGCTTGTCAGCGAGATGCACGAGGCAAGCCCCGCCCGGGCCCGGCTC
GCGGCCGTGGCCGCCACCCTGGACGGGTTCGAGCTCTCCCGGATCGACCTGGAGCAGCGCCGCGAGGGCGACGTGCTCGG
GCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGATGCTCGCCGTCATCGACGACGAGGAGGTCATCGCCCAGGCCCGGG
AGGAGGCCACCCGCGTCGTCGCCGACGACCCCGAACTGGAGCGGCTGCCGGGCCTGAAGCTCGCGCTGGACGCCCTGCTG
GACACCGAGCGCGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(63-141)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(646-707)

DEAD/DEAH box helicase (DEAD)

(295-447)

Helicase conserved C-terminal domain (Helicase_C)

(541-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.473

94.938

0.365

Multiple sequence alignment