Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LG33_RS08420 Genome accession   NZ_CP009423
Coordinates   1643440..1643886 (-) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA300_SUR1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638440..1648886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG33_RS08390 (LG33_08260) gcvPA 1639366..1640712 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LG33_RS08395 (LG33_08265) gcvT 1640732..1641823 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LG33_RS08400 (LG33_08270) - 1641982..1642506 (-) 525 WP_001015117.1 shikimate kinase -
  LG33_RS08405 (LG33_08275) - 1642496..1642642 (-) 147 WP_001789879.1 hypothetical protein -
  LG33_RS08410 (LG33_08280) comGF 1642739..1643236 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  LG33_RS08415 (LG33_08285) comGE 1643154..1643453 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LG33_RS08420 (LG33_08290) comGD 1643440..1643886 (-) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  LG33_RS08425 (LG33_08295) comGC 1643864..1644175 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LG33_RS08430 (LG33_08300) comGB 1644189..1645259 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LG33_RS08435 (LG33_08305) comGA 1645231..1646205 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LG33_RS08440 (LG33_08310) - 1646257..1646880 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LG33_RS08445 (LG33_08315) - 1646877..1647206 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LG33_RS08450 (LG33_08320) - 1647206..1648192 (-) 987 WP_000161314.1 ROK family glucokinase -
  LG33_RS08455 (LG33_08325) - 1648189..1648392 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=129181 LG33_RS08420 WP_001791635.1 1643440..1643886(-) (comGD) [Staphylococcus aureus strain USA300_SUR1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=129181 LG33_RS08420 WP_001791635.1 1643440..1643886(-) (comGD) [Staphylococcus aureus strain USA300_SUR1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment