Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M444_RS13435 Genome accession   NZ_CP011664
Coordinates   3162154..3163179 (-) Length   341 a.a.
NCBI ID   WP_008741571.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3157154..3168179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS13405 (M444_13385) - 3157571..3158140 (-) 570 WP_008741577.1 GPR1/FUN34/YaaH family transporter -
  M444_RS13410 (M444_13390) - 3158240..3158770 (-) 531 WP_008741576.1 universal stress protein -
  M444_RS13415 (M444_13395) - 3159223..3159582 (+) 360 WP_047961018.1 hypothetical protein -
  M444_RS13420 (M444_13400) - 3159959..3161128 (+) 1170 WP_008741574.1 helix-turn-helix domain-containing protein -
  M444_RS13425 (M444_13405) orn 3161269..3161871 (+) 603 WP_008741573.1 oligoribonuclease -
  M444_RS13435 (M444_13415) cytR 3162154..3163179 (-) 1026 WP_008741571.1 LacI family DNA-binding transcriptional regulator Regulator
  M444_RS13440 (M444_13420) - 3163283..3164635 (+) 1353 WP_008741570.1 extracellular solute-binding protein -
  M444_RS13445 (M444_13425) - 3164652..3165635 (+) 984 WP_008741569.1 sugar ABC transporter permease -
  M444_RS13450 (M444_13430) - 3165632..3166456 (+) 825 WP_037793331.1 carbohydrate ABC transporter permease -
  M444_RS13455 (M444_13435) - 3166453..3167805 (+) 1353 WP_008741567.1 GH1 family beta-glucosidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36177.05 Da        Isoelectric Point: 5.7389

>NTDB_id=129156 M444_RS13435 WP_008741571.1 3162154..3163179(-) (cytR) [Streptomyces sp. Mg1]
MNGQGRSGGRPTLEEVAVRAGVGRGTVSRVINGSSKVSEHTRAAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSDVVRGVGATLAETDVQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPAVISGRR
SADEALPCVDSDNLAGAAEAVRHLLGRGRRAIATITGPLDVYGAQCRLDGYRQALAAAGQPVAEELIAVADFTEEGGRRA
MRELLERRPGIDAVFAASDVMAAGARRELRAAGRRIPDDVAVVGFDDSVVARHMDPPLTSVRQPIEEMGRTMARVLLERI
AGESPEHSIVLPTELVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=129156 M444_RS13435 WP_008741571.1 3162154..3163179(-) (cytR) [Streptomyces sp. Mg1]
ATGAACGGGCAAGGGCGCAGCGGGGGACGGCCGACCCTGGAGGAGGTGGCGGTCCGGGCGGGAGTCGGACGCGGCACCGT
CTCCCGGGTGATCAACGGGTCGTCCAAGGTCAGCGAGCACACCAGGGCCGCCGTCGAGGCCGCCGTCGCCGAGCTCGGGT
ACGTGCCCAACCGCGCCGCCCGCGCCCTCGCGGCCAACCGCACCGACGCCATCGCCCTCGTCATCCCCGAGCCCGAGGCG
CGCTTCTTCGCCGAGCCCTACTTCTCGGACGTGGTCCGGGGCGTCGGCGCCACCCTCGCCGAGACCGACGTCCAGCTCGT
CCTCACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGCCTCGCCCAGTACCTCTCCGGGCACCGCGTCGACGGCGTCCTGC
TGGTCTCCGTACACGCCGGGGACCCGCTGCCGGAGCTGCTGGCCGAGCTCGGCATCCCCGCCGTGATCAGCGGCCGCCGC
TCCGCCGACGAGGCGCTGCCCTGCGTGGACTCCGACAACCTGGCGGGCGCCGCCGAGGCCGTACGCCACCTCCTGGGCCG
GGGCCGGCGCGCCATCGCCACGATCACCGGCCCGCTGGACGTCTACGGGGCCCAGTGCCGCCTGGACGGCTACCGGCAGG
CCCTCGCCGCCGCCGGGCAGCCCGTGGCCGAGGAGCTGATCGCCGTCGCGGACTTCACCGAGGAGGGCGGCCGGCGGGCC
ATGCGCGAGCTGCTGGAGCGCCGCCCCGGGATCGACGCGGTGTTCGCCGCCTCCGACGTGATGGCGGCGGGCGCCCGCCG
CGAGCTGCGCGCGGCCGGCCGCCGGATACCGGACGACGTGGCGGTCGTCGGCTTCGACGACTCGGTGGTGGCCCGGCACA
TGGACCCGCCGCTGACCAGCGTCCGCCAGCCGATCGAGGAGATGGGCCGCACCATGGCCCGGGTGCTGCTGGAGCGGATC
GCGGGGGAGTCCCCGGAGCACTCGATCGTGCTCCCGACCGAGCTGGTGGTCCGGGAGTCCTCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(12-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.5

98.534

0.37
  cytR Vibrio parahaemolyticus RIMD 2210633

36.905

98.534

0.364

Multiple sequence alignment