Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ABA10_RS19900 Genome accession   NZ_CP011534
Coordinates   3888051..3888740 (-) Length   229 a.a.
NCBI ID   WP_047183454.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883051..3893740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS19880 (ABA10_19880) yxeA 3883956..3884303 (-) 348 WP_015715011.1 YxeA family protein -
  ABA10_RS19885 (ABA10_19885) yxdM 3884317..3886185 (-) 1869 WP_047183453.1 ABC transporter permease YxdM -
  ABA10_RS19890 (ABA10_19890) yxdL 3886160..3886933 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  ABA10_RS19895 (ABA10_19895) yxdK 3887077..3888054 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  ABA10_RS19900 (ABA10_19900) braR 3888051..3888740 (-) 690 WP_047183454.1 two-component system response regulator YxdJ Regulator
  ABA10_RS19905 (ABA10_19905) iolJ 3888848..3889720 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  ABA10_RS19910 (ABA10_19910) iolI 3889741..3890577 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  ABA10_RS19915 (ABA10_19915) iolH 3890663..3891532 (-) 870 WP_014478480.1 sugar phosphate isomerase/epimerase -
  ABA10_RS19920 (ABA10_19920) iolG 3891552..3892586 (-) 1035 WP_047183455.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26589.27 Da        Isoelectric Point: 4.7647

>NTDB_id=129031 ABA10_RS19900 WP_047183454.1 3888051..3888740(-) (braR) [Bacillus subtilis strain UD1022]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTTVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
SLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=129031 ABA10_RS19900 WP_047183454.1 3888051..3888740(-) (braR) [Bacillus subtilis strain UD1022]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAACTGTTCTTGATGTCTTTTTGCGGGAGAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCAATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
TCGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATCGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment