Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ABA10_RS17335 Genome accession   NZ_CP011534
Coordinates   3374984..3375697 (-) Length   237 a.a.
NCBI ID   WP_047183246.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3369984..3380697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS17315 (ABA10_17315) ghrB 3370129..3371106 (+) 978 WP_080344231.1 D-glycerate dehydrogenase -
  ABA10_RS17320 (ABA10_17320) psdB 3371143..3373083 (-) 1941 WP_047183244.1 lantibiotic ABC transporter permease PsdB -
  ABA10_RS17325 (ABA10_17325) psdA 3373058..3373837 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  ABA10_RS17330 (ABA10_17330) psdS 3373920..3374990 (-) 1071 WP_047183245.1 two-component sensor histidine kinase PsdS -
  ABA10_RS17335 (ABA10_17335) braR 3374984..3375697 (-) 714 WP_047183246.1 two-component system response regulator PsdR Regulator
  ABA10_RS17340 (ABA10_17340) yvzJ 3375844..3376053 (+) 210 WP_003243327.1 lipoprotein -
  ABA10_RS17345 (ABA10_17345) yvcN 3376089..3376853 (-) 765 WP_080344232.1 arylamine N-acetyltransferase -
  ABA10_RS17350 (ABA10_17350) crh 3376854..3377111 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  ABA10_RS17355 (ABA10_17355) whiA 3377136..3378086 (-) 951 WP_047183247.1 DNA-binding protein WhiA -
  ABA10_RS17360 (ABA10_17360) mgfK 3378109..3379062 (-) 954 WP_047183589.1 gluconeogenesis morphogenetic factor -
  ABA10_RS17365 (ABA10_17365) rapZ 3379064..3379951 (-) 888 WP_003243903.1 RNase adapter RapZ -
  ABA10_RS17370 (ABA10_17370) rppI 3379976..3380452 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27482.33 Da        Isoelectric Point: 4.6062

>NTDB_id=129016 ABA10_RS17335 WP_047183246.1 3374984..3375697(-) (braR) [Bacillus subtilis strain UD1022]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVVAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=129016 ABA10_RS17335 WP_047183246.1 3374984..3375697(-) (braR) [Bacillus subtilis strain UD1022]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACTTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGGTGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCCAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGTATTTTGTTTTCACAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment