Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ABA10_RS11445 Genome accession   NZ_CP011534
Coordinates   2255255..2256745 (-) Length   496 a.a.
NCBI ID   WP_047182818.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250255..2261745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS11415 (ABA10_11415) gudB 2250397..2251671 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ABA10_RS11420 (ABA10_11420) mecB 2251827..2252411 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ABA10_RS11425 (ABA10_11425) ypbG 2252570..2253349 (-) 780 WP_047182815.1 metallophosphoesterase -
  ABA10_RS11430 (ABA10_11430) ypbF 2253435..2253878 (-) 444 WP_003230531.1 YpbF family protein -
  ABA10_RS11435 (ABA10_11435) claE 2253941..2254675 (-) 735 WP_047182816.1 LysM peptidoglycan-binding domain-containing protein -
  ABA10_RS11440 (ABA10_11440) ypbD 2254626..2255228 (-) 603 WP_047182817.1 CPBP family intramembrane glutamic endopeptidase -
  ABA10_RS11445 (ABA10_11445) recS 2255255..2256745 (-) 1491 WP_047182818.1 ATP-dependent DNA helicase RecQ Machinery gene
  ABA10_RS11450 (ABA10_11450) gmmB 2256738..2257796 (-) 1059 WP_047182819.1 helix-turn-helix domain-containing protein -
  ABA10_RS11455 (ABA10_11455) fdxA 2258062..2258310 (+) 249 WP_003225461.1 ferredoxin -
  ABA10_RS11460 (ABA10_11460) fmnP 2258350..2258922 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ABA10_RS11470 (ABA10_11470) serA 2259419..2260996 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56499.01 Da        Isoelectric Point: 6.4518

>NTDB_id=128970 ABA10_RS11445 WP_047182818.1 2255255..2256745(-) (recS) [Bacillus subtilis strain UD1022]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLSCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=128970 ABA10_RS11445 WP_047182818.1 2255255..2256745(-) (recS) [Bacillus subtilis strain UD1022]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGATGGAAAGCCTAGTGTCAGCATTTTGCTACGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAATTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCTCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996