Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ABA10_RS09230 Genome accession   NZ_CP011534
Coordinates   1768411..1768842 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain UD1022     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763411..1773842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS09210 (ABA10_09210) spoVS 1763972..1764232 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ABA10_RS09215 (ABA10_09215) tdh 1764498..1765541 (+) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  ABA10_RS09220 (ABA10_09220) kbl 1765554..1766732 (+) 1179 WP_047182626.1 glycine C-acetyltransferase -
  ABA10_RS09225 (ABA10_09225) miaB 1766880..1768409 (+) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABA10_RS09230 (ABA10_09230) ymcA 1768411..1768842 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ABA10_RS09235 (ABA10_09235) cotE 1769104..1769649 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ABA10_RS09240 (ABA10_09240) hexA 1769782..1772358 (+) 2577 WP_015483239.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=128961 ABA10_RS09230 WP_003231834.1 1768411..1768842(+) (ymcA) [Bacillus subtilis strain UD1022]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=128961 ABA10_RS09230 WP_003231834.1 1768411..1768842(+) (ymcA) [Bacillus subtilis strain UD1022]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment