Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABA10_RS04270 Genome accession   NZ_CP011534
Coordinates   838785..839501 (+) Length   238 a.a.
NCBI ID   WP_047182279.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 833785..844501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS04255 (ABA10_04255) yfkQ 833866..835407 (-) 1542 WP_015383095.1 spore germination protein -
  ABA10_RS04260 (ABA10_04260) treP 835596..837008 (+) 1413 WP_015383096.1 PTS system trehalose-specific EIIBC component -
  ABA10_RS04265 (ABA10_04265) treC 837079..838764 (+) 1686 WP_047182278.1 alpha,alpha-phosphotrehalase -
  ABA10_RS04270 (ABA10_04270) treR 838785..839501 (+) 717 WP_047182279.1 trehalose operon repressor Regulator
  ABA10_RS04275 (ABA10_04275) hypO 839641..840306 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27872.89 Da        Isoelectric Point: 7.5089

>NTDB_id=128916 ABA10_RS04270 WP_047182279.1 838785..839501(+) (treR) [Bacillus subtilis strain UD1022]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHEMTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPTELIQKQLRANLNDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=128916 ABA10_RS04270 WP_047182279.1 838785..839501(+) (treR) [Bacillus subtilis strain UD1022]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGATGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GACAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGAATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTTGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.88

98.319

0.412

Multiple sequence alignment