Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ABA10_RS02410 Genome accession   NZ_CP011534
Coordinates   468341..468775 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain UD1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463341..473775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS02380 (ABA10_02380) ydaD 463987..464847 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  ABA10_RS02385 (ABA10_02385) lyxE 464863..465366 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ABA10_RS02390 (ABA10_02390) ydaF 465455..466006 (+) 552 WP_047182111.1 GNAT family protein -
  ABA10_RS02395 (ABA10_02395) ydaG 466084..466506 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ABA10_RS02400 (ABA10_02400) amj 467012..467821 (+) 810 WP_015715258.1 lipid II flippase Amj -
  ABA10_RS02405 (ABA10_02405) ydzA 467866..468156 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  ABA10_RS02410 (ABA10_02410) lrpC 468341..468775 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ABA10_RS02415 (ABA10_02415) topB 468840..471023 (+) 2184 WP_047182112.1 DNA topoisomerase III -
  ABA10_RS02420 (ABA10_02420) ephJ 471226..472314 (+) 1089 WP_047182113.1 hypothetical protein -
  ABA10_RS02425 (ABA10_02425) epsK 472295..473146 (+) 852 WP_047182114.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=128911 ABA10_RS02410 WP_003246585.1 468341..468775(+) (lrpC) [Bacillus subtilis strain UD1022]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=128911 ABA10_RS02410 WP_003246585.1 468341..468775(+) (lrpC) [Bacillus subtilis strain UD1022]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAACTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCTGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment