Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   IX91_RS20200 Genome accession   NZ_CP009355
Coordinates   1118518..1120572 (-) Length   684 a.a.
NCBI ID   WP_004743136.1    Uniprot ID   F9T140
Organism   Vibrio tubiashii ATCC 19109     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113518..1125572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS20185 (IX91_20635) clcA 1114582..1115982 (+) 1401 WP_004743139.1 H(+)/Cl(-) exchange transporter ClcA -
  IX91_RS20190 (IX91_20640) - 1116100..1117071 (+) 972 WP_004743138.1 TDT family transporter -
  IX91_RS20195 (IX91_20645) cqsA 1117281..1118462 (+) 1182 WP_004743137.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IX91_RS20200 (IX91_20650) cqsS 1118518..1120572 (-) 2055 WP_004743136.1 hybrid sensor histidine kinase/response regulator Regulator
  IX91_RS20205 (IX91_20655) - 1120769..1123816 (-) 3048 WP_004743135.1 AAA family ATPase -
  IX91_RS20210 (IX91_20660) - 1123825..1124955 (-) 1131 WP_004743134.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 684 a.a.        Molecular weight: 78552.58 Da        Isoelectric Point: 5.3586

>NTDB_id=128882 IX91_RS20200 WP_004743136.1 1118518..1120572(-) (cqsS) [Vibrio tubiashii ATCC 19109]
MNVVKKIYQYADPNLELVGWMGFFGFPAYFYIWSYVYPQSYENGPLRLFCALLLLGLALRKYAPPPLKRYLPYYYIATIT
ICLPFFFSFMMFMNEWSTVWAMSFMSSIFLHVLLVHETRVMLLQAMVAIVAAYLFSYGLEHAPAKVETEVVVIWPYIPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASVDVLDSSLPSIKTIKGDKAEIDKLDIERMKEVLS
GADEVIRNGNEAIDLLLTSIDQSRVSHSTFRSYSVEKIARESLASFSYPSDHAKEVVNLHVESDFDYFGSDTLLKYALYN
LLKNSLYYQNGEEFKIAITIRSDHEFNYLYFEDNGIGIEKDKLEFVFKDFYTSGKSSSYGLGLPFCKRVMHAFGGRIKCE
SVLGEWTRFTLKFPRYESQKVSSIKQDILRTKSMLYVGDDVAVKRKLNEFTFYTGALCDVVDIEQARGKEEFEFEYDLIL
LDLETCSEQEYLMLESKLHFTEAKIVMLFAQDRQYHNRFSRFLTFYPKDKAQFLLDVTQSVDALMFGNVEPNRNLIPKKV
PAVVGKRILIADDNESMRQLTTILLNKQGYQVSQAGDGNEVLSVLSSEQVDLILMDLEMPMLDGLETTTLIRESEEVYAN
VPILGHTGDNRKETLTKIDQAGMNGYLIKPVDKVKLLDKVADYI

Nucleotide


Download         Length: 2055 bp        

>NTDB_id=128882 IX91_RS20200 WP_004743136.1 1118518..1120572(-) (cqsS) [Vibrio tubiashii ATCC 19109]
ATGAATGTAGTAAAGAAGATTTATCAATACGCAGATCCCAACCTTGAGCTAGTCGGGTGGATGGGCTTCTTCGGCTTTCC
TGCATACTTCTACATTTGGTCTTATGTATATCCTCAATCCTACGAGAATGGTCCACTAAGGCTTTTTTGTGCTTTGCTCC
TGCTTGGATTAGCGCTCAGAAAGTACGCGCCGCCGCCGCTTAAGCGTTACCTGCCATACTATTACATTGCCACTATCACC
ATCTGCTTACCGTTCTTTTTCTCGTTTATGATGTTTATGAATGAATGGTCGACAGTTTGGGCAATGTCCTTCATGTCTTC
GATCTTCTTGCATGTGTTATTAGTCCATGAGACTCGTGTCATGTTGCTGCAGGCAATGGTTGCCATCGTAGCGGCCTACT
TGTTTAGCTATGGATTAGAACACGCGCCTGCCAAAGTTGAGACAGAAGTGGTCGTGATTTGGCCTTACATCCCAATTTTC
TTGTTTACCTATGTGTTCGGTAACTTGTTCTACTTCCGTAACCAAGTGGAGCATGAGTCGAAAGTCTCAATTGCCAAGTC
ATTTGGCGCCGGTATCGCTCATGAAATGCGCAATCCGTTAAGCGCACTTAAAGCCTCCGTAGATGTACTTGACTCGTCTT
TACCATCTATCAAGACGATTAAAGGAGACAAAGCAGAGATCGACAAGCTGGATATCGAGCGCATGAAAGAAGTGCTGTCA
GGAGCGGATGAAGTCATACGCAATGGTAACGAAGCGATAGATTTATTGCTTACCTCCATTGACCAAAGCCGAGTATCACA
CTCAACATTTCGGTCTTATTCTGTCGAGAAGATCGCCAGAGAGTCGCTGGCAAGTTTCTCTTACCCCAGCGATCACGCCA
AAGAAGTGGTGAATTTACATGTCGAAAGTGATTTTGACTACTTTGGTAGCGATACGTTATTGAAGTACGCGCTGTACAAT
TTGCTAAAGAACTCACTCTATTACCAGAATGGTGAAGAGTTTAAGATTGCGATCACGATTAGGAGTGATCATGAGTTTAA
CTATCTCTACTTCGAAGACAACGGAATCGGGATAGAGAAAGATAAGTTAGAGTTTGTCTTTAAAGATTTTTATACATCAG
GAAAATCGTCAAGCTATGGGCTTGGATTGCCTTTTTGTAAACGCGTCATGCACGCATTTGGCGGCAGAATAAAATGTGAG
TCGGTACTCGGAGAGTGGACGCGTTTTACCCTTAAATTTCCTCGCTATGAGTCTCAAAAAGTGTCCTCAATAAAACAAGA
TATTCTAAGAACTAAATCAATGCTTTACGTTGGTGATGATGTAGCGGTCAAGCGTAAATTGAACGAGTTTACTTTCTACA
CAGGAGCGCTGTGTGATGTGGTCGATATTGAGCAGGCTAGGGGGAAGGAAGAGTTCGAATTTGAATATGATTTGATACTA
CTCGATCTAGAGACATGCAGTGAGCAAGAGTATTTAATGCTTGAGTCTAAGCTCCACTTTACTGAAGCAAAAATCGTGAT
GCTCTTTGCTCAGGATCGCCAGTATCACAATCGATTCAGCCGATTCCTTACTTTCTATCCAAAAGATAAAGCGCAATTTC
TGCTTGATGTCACTCAGTCGGTTGATGCGCTTATGTTTGGTAACGTTGAGCCTAACCGAAACCTCATTCCGAAAAAAGTA
CCAGCCGTGGTTGGTAAGCGCATCTTGATTGCCGATGACAATGAATCAATGAGGCAGTTAACCACTATCTTGCTCAACAA
GCAGGGTTACCAAGTTTCTCAGGCCGGAGATGGCAATGAAGTGTTGAGTGTTCTGAGCAGCGAACAGGTTGATTTGATTC
TGATGGACCTCGAAATGCCAATGTTGGATGGCTTAGAAACTACGACTCTTATTCGAGAGTCAGAAGAAGTCTACGCTAAC
GTGCCGATTCTTGGACACACCGGTGATAATCGAAAAGAAACCCTCACTAAAATTGACCAAGCGGGTATGAATGGATACTT
AATTAAGCCAGTCGATAAAGTTAAATTACTTGATAAAGTAGCGGATTACATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-415)

Response regulator receiver domain (Response_reg)

(568-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9T140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.419

100

0.497

Multiple sequence alignment