Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IX91_RS14070 Genome accession   NZ_CP009354
Coordinates   3072420..3073427 (-) Length   335 a.a.
NCBI ID   WP_004743261.1    Uniprot ID   A0AAE5GUQ6
Organism   Vibrio tubiashii ATCC 19109     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067420..3078427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS14045 (IX91_14335) - 3067601..3069199 (-) 1599 WP_004743266.1 BCCT family transporter -
  IX91_RS14055 (IX91_14345) hslU 3069477..3070811 (-) 1335 WP_004743264.1 HslU--HslV peptidase ATPase subunit -
  IX91_RS14060 (IX91_14350) hslV 3070862..3071404 (-) 543 WP_004743263.1 ATP-dependent protease subunit HslV -
  IX91_RS14065 (IX91_14355) ftsN 3071753..3072301 (-) 549 WP_004743262.1 cell division protein FtsN -
  IX91_RS14070 (IX91_14360) cytR 3072420..3073427 (-) 1008 WP_004743261.1 DNA-binding transcriptional regulator CytR Regulator
  IX91_RS14075 (IX91_14365) priA 3073785..3075986 (-) 2202 WP_004743260.1 primosomal protein N' -
  IX91_RS14080 (IX91_14370) rpmE 3076270..3076488 (+) 219 WP_004743259.1 50S ribosomal protein L31 -
  IX91_RS14085 (IX91_14375) - 3076745..3078022 (+) 1278 WP_004743258.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36874.52 Da        Isoelectric Point: 6.6018

>NTDB_id=128875 IX91_RS14070 WP_004743261.1 3072420..3073427(-) (cytR) [Vibrio tubiashii ATCC 19109]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPETAVLCQFRHQGYQQALRRAGITMNPNYCTSGDFTFEAGAKAIRQLLALPDAPTA
VFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPRVL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=128875 IX91_RS14070 WP_004743261.1 3072420..3073427(-) (cytR) [Vibrio tubiashii ATCC 19109]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTTTCAACAGCGACAGTGTCTAGAGCGCTAATGAATCCAGAAAA
GGTATCGTCAGCGACAAGGAAAAGAGTCGAAGATGCTGTTTTAGAAGCTGGTTATTCACCAAACTCGTTGGCGCGCAACT
TGCGTCGTAACGAATCAAAAACAATCATCGCAATCATTCCAGATATTTGTGATCCCTACTACACCGAGATCATTCGAGGA
ATTGAAGATGCGGCAATGGAGCACGGATACATCGTTTTGCTTGGCGATAGTGGGCAGCAGAAGAAGCGTGAAAGCTCATT
TGTAAACCTAGTATTTACTAAGCAAGCGGATGGTATGTTGCTGCTTGGTACCGATCTTCCTTTTGATGTCAGTAAACCTG
AACAAAAGAACTTACCGCCTATGGTAATGGCTTGTGAGTTTGCACCTGAATTAGAACTACCTACTGTACATATCGACAAC
CTAACTTCTGCCTTTGAAGCGGTTAACTACCTAACGCAGATGGGTCATAAGCGAATTGCACAAATCTCAGGCCCTGAAAC
AGCGGTACTATGTCAGTTCCGTCATCAAGGTTATCAGCAGGCCCTTAGACGTGCAGGGATCACCATGAACCCGAATTACT
GCACTTCCGGTGATTTCACCTTTGAGGCTGGAGCGAAAGCAATCCGCCAATTGCTAGCATTACCAGATGCGCCGACAGCG
GTGTTCTGTCATAACGATGCAATGGCGATTGGGGCGATTCAAGAGGCGAAGAAGCTAGGTCTGCGTGTTCCGCAAGACCT
CTCCATTGTAGGGTTTGATGATATTCACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAGCCTCGCTATG
AAATTGGCCGTCAAGCAATGCTTATGATGCTTGAGCTGCTGCGTGGGCATGATGTTCGCGCAGGGTCGAGATTGCTTGAA
ACCAAGCTGGTGGTACGTGAAAGCGCTGCGCCACCAAGAGTGCTTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.072

99.104

0.922
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.403

0.881

Multiple sequence alignment