Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IX91_RS12835 Genome accession   NZ_CP009354
Coordinates   2818890..2819408 (-) Length   172 a.a.
NCBI ID   WP_004748160.1    Uniprot ID   F9TC36
Organism   Vibrio tubiashii ATCC 19109     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2813890..2824408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS12800 (IX91_13075) - 2814699..2815403 (+) 705 WP_004748167.1 hypothetical protein -
  IX91_RS12805 (IX91_13080) - 2815461..2816003 (-) 543 WP_100225189.1 helix-turn-helix domain-containing protein -
  IX91_RS26825 - 2815969..2816373 (-) 405 WP_236642813.1 site-specific integrase -
  IX91_RS26830 - 2816398..2817009 (-) 612 WP_236642815.1 hypothetical protein -
  IX91_RS25850 - 2817470..2818225 (+) 756 WP_004748164.1 ABC transporter substrate-binding protein -
  IX91_RS12830 (IX91_13105) - 2818349..2818825 (+) 477 WP_004748162.1 RDD family protein -
  IX91_RS12835 (IX91_13110) luxS 2818890..2819408 (-) 519 WP_004748160.1 S-ribosylhomocysteine lyase Regulator
  IX91_RS12840 (IX91_13115) - 2819433..2820032 (-) 600 WP_038197165.1 hypothetical protein -
  IX91_RS12845 (IX91_13120) gshA 2820042..2821610 (-) 1569 WP_004748157.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19030.81 Da        Isoelectric Point: 4.6305

>NTDB_id=128865 IX91_RS12835 WP_004748160.1 2818890..2819408(-) (luxS) [Vibrio tubiashii ATCC 19109]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGEAVEIIDISP
MGCRTGFYMSLIGTPQEQQVAEAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGVSVNKNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=128865 IX91_RS12835 WP_004748160.1 2818890..2819408(-) (luxS) [Vibrio tubiashii ATCC 19109]
ATGCCGTTATTAGATAGTTTTACCGTAGACCACACACGCATGAATGCGCCTGCTGTTCGTGTGGCAAAAACCATGACGAC
ACCAAAAGGTGACACCATTACGGTATTTGACCTACGCTTTACCGCGCCAAATAAAGATATCTTGTCAGAGAAAGGAATTC
ATACTCTAGAGCACCTCTACGCAGGCTTTATGCGTAATCACCTGAATGGTGAAGCTGTAGAAATTATTGATATTTCTCCA
ATGGGCTGTCGTACAGGTTTTTACATGAGCCTGATTGGTACGCCACAAGAGCAGCAAGTTGCCGAAGCTTGGCTATCTGC
AATGCAAGATGTGTTAAAAGTCGAGAGCCAGAACAAAATCCCAGAGCTGAATGAGTACCAATGTGGTACAGCGGCTATGC
ACTCGTTAGATGAAGCGAAACAGATTGCTGAAGCTATTCTTGCAGCTGGAGTTTCGGTTAACAAAAATGATGAGCTAGCA
CTGCCAGAAGAGATGCTAAAAGAGCTTAAAATAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9TC36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment