Detailed information NTG0128846

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IX91_RS02140
• Genome accession: NZ_CP009354
• Coordinates: 426988..427962 (+)
• Length: 324 a.a.
• NCBI ID: WP_004742589.1
• Uniprot ID: F9SZN7
• Organism: Vibrio tubiashii ATCC 19109
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 421988..432962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IX91_RS02105 (IX91_02155)	ftsB	422054..422332 (+)	279	WP_004742582.1	cell division protein FtsB	-
IX91_RS02110 (IX91_02160)	ispD	422333..423040 (+)	708	WP_004742583.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IX91_RS02115 (IX91_02165)	ispF	423044..423520 (+)	477	WP_004742584.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IX91_RS02120 (IX91_02170)	truD	423574..424620 (+)	1047	WP_004742585.1	tRNA pseudouridine(13) synthase TruD	-
IX91_RS02125 (IX91_02175)	surE	424617..425375 (+)	759	WP_004742586.1	5'/3'-nucleotidase SurE	-
IX91_RS02130 (IX91_02180)	-	425378..426004 (+)	627	WP_004742587.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IX91_RS02135 (IX91_02185)	nlpD	426007..426918 (+)	912	WP_004742588.1	murein hydrolase activator NlpD	-
IX91_RS02140 (IX91_02190)	rpoS	426988..427962 (+)	975	WP_004742589.1	RNA polymerase sigma factor RpoS	Regulator
IX91_RS02145 (IX91_02195)	-	428030..429301 (-)	1272	WP_038197210.1	HlyC/CorC family transporter	-
IX91_RS02150 (IX91_02200)	-	429430..430224 (-)	795	WP_004742591.1	inner membrane protein YpjD	-
IX91_RS02155 (IX91_02205)	ffh	430433..431821 (+)	1389	WP_004742592.1	signal recognition particle protein	-
IX91_RS02160 (IX91_02210)	rpsP	432029..432277 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
IX91_RS02165 (IX91_02215)	rimM	432307..432855 (+)	549	WP_004742594.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37109.03 Da
• Isoelectric Point: 4.7232

>NTDB_id=128846 IX91_RS02140 WP_004742589.1 426988..427962(+) (rpoS) [Vibrio tubiashii ATCC 19109]
MSISNTATKVEEFEIGQETTETFQAVESAKPAQETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPEVS
TQDDDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENLFS
VTED

Nucleotide

• Length: 975 bp

>NTDB_id=128846 IX91_RS02140 WP_004742589.1 426988..427962(+) (rpoS) [Vibrio tubiashii ATCC 19109]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTCGAAATCGGTCAAGAAACAACGGAAACGTTTCAAGCCGTAGA
ATCTGCAAAACCCGCACAAGAAACCAAAGAAGAGTTTGATGCATCGACCAAAAGTCTTGATGCTACCCAGCTTTACTTAG
GTGAAATTGGTTTTTCTCCACTACTTACCGCTGAAGAAGAAGTTCTGTATGCGCGTCGTGCCTTGCGAGGTGACGAAGCT
GCGCGTAAACGAATGATCGAAAGTAACCTTCGCTTAGTAGTGAAAATCTCACGTCGATATAGCAACCGTGGCCTAGCGCT
TCTTGATCTTATTGAAGAAGGGAATCTAGGATTGATCCGTGCGGTTGAGAAGTTCGACCCAGAGCGTGGTTTCAGATTCT
CTACCTACGCAACATGGTGGATTCGCCAAACCATTGAACGTGCATTAATGAATCAAACTCGCACGATTCGATTACCTATT
CACGTCGTCAAAGAGCTCAATATTTACCTGCGTACCGCTCGTGAACTTTCACAAAAACTAGACCATGAGCCTACTGCAGA
AGAGATAGCGACTCAGCTAGATAAGCCAGTCGATGATGTGAGTAAAATGCTCCGCCTTAATGAACGCATCAGTTCTGTTG
ATACACCCATTGGTGGTGATGGTGAAAAGGCTCTGCTTGATATCATTCCAGATATTAATAACTCAGACCCTGAAGTCTCA
ACTCAAGATGACGACATCAAAAACTCTCTAATCCATTGGTTAGATGAGCTTAATCCAAAGCAAAAAGAAGTCTTAGCGCG
TCGCTTTGGCCTACTTGGCTACGAGCCATCGACTCTTGAAGAGGTCGGTCGCGAGATTAATCTTACTCGAGAACGTGTTC
GTCAGATACAGGTAGAAGGTTTACGTCGCCTACGAGAGATATTGATCAAGCAGGGACTAAATATGGAAAACCTATTTAGT
GTCACTGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

3D structure

• AlphaFold DB: F9SZN7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.631	100	0.867