Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AS86_RS32470 Genome accession   NZ_CP009351
Coordinates   5167275..5169014 (+) Length   579 a.a.
NCBI ID   WP_000947759.1    Uniprot ID   A0A9W7Q8P2
Organism   Bacillus thuringiensis HD1002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5162275..5174014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS32450 (AS86_5354) ispA 5162491..5163381 (+) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -
  AS86_RS32455 (AS86_5355) dxs 5163683..5165575 (+) 1893 WP_000366457.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AS86_RS32460 (AS86_5356) - 5165579..5166418 (+) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  AS86_RS32465 (AS86_5357) argR 5166561..5167010 (+) 450 WP_001032580.1 arginine repressor ArgR -
  AS86_RS32470 (AS86_5358) recN 5167275..5169014 (+) 1740 WP_000947759.1 DNA repair protein RecN Machinery gene
  AS86_RS32475 (AS86_5359) spoIVB 5169133..5170431 (+) 1299 WP_002000940.1 SpoIVB peptidase -
  AS86_RS32480 (AS86_5360) spo0A 5170721..5171515 (+) 795 WP_014894889.1 sporulation transcription factor Spo0A Regulator
  AS86_RS32485 (AS86_5361) - 5171681..5172652 (+) 972 WP_001058889.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65835.99 Da        Isoelectric Point: 4.8231

>NTDB_id=128824 AS86_RS32470 WP_000947759.1 5167275..5169014(+) (recN) [Bacillus thuringiensis HD1002]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKSLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRAGNAEEPLVEGAPVRLTVDGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=128824 AS86_RS32470 WP_000947759.1 5167275..5169014(+) (recN) [Bacillus thuringiensis HD1002]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAATCACTTGTTGATATTCATGGACAGCACG
AAACACAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAATGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCAGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAGAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGCGAATTATG
AAGAGAGCAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGTGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment