Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AS86_RS25650 Genome accession   NZ_CP009351
Coordinates   3881484..3882005 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis HD1002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3876484..3887005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS25620 (AS86_3998) spo0J 3876929..3877780 (+) 852 WP_001051826.1 stage 0 sporulation protein Spo0J -
  AS86_RS25625 (AS86_3999) yyaC 3877801..3878397 (-) 597 WP_001020711.1 spore protease YyaC -
  AS86_RS25630 (AS86_4000) - 3878657..3879538 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  AS86_RS25635 (AS86_4001) - 3879562..3879759 (+) 198 WP_000435486.1 DUF951 domain-containing protein -
  AS86_RS25640 (AS86_4002) ychF 3879875..3880975 (+) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  AS86_RS25645 (AS86_4003) rpsF 3881167..3881457 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  AS86_RS25650 (AS86_4004) ssbA 3881484..3882005 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  AS86_RS25655 (AS86_4005) rpsR 3882051..3882284 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  AS86_RS25660 (AS86_4006) - 3882364..3883299 (+) 936 WP_000814843.1 YybS family protein -
  AS86_RS25665 (AS86_4007) - 3883378..3885351 (+) 1974 WP_001113790.1 DHH family phosphoesterase -
  AS86_RS25670 (AS86_4008) rplI 3885348..3885794 (+) 447 WP_000864237.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=128807 AS86_RS25650 WP_000981963.1 3881484..3882005(+) (ssbA) [Bacillus thuringiensis HD1002]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=128807 AS86_RS25650 WP_000981963.1 3881484..3882005(+) (ssbA) [Bacillus thuringiensis HD1002]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment