Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AS86_RS13495 Genome accession   NZ_CP009351
Coordinates   1556897..1557175 (-) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus thuringiensis HD1002     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551897..1562175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS86_RS13480 (AS86_1578) - 1553297..1553956 (-) 660 WP_000682536.1 CatB-related O-acetyltransferase -
  AS86_RS13485 (AS86_1579) - 1554209..1554967 (-) 759 WP_000347992.1 TSUP family transporter -
  AS86_RS13490 (AS86_1580) - 1555035..1556285 (-) 1251 WP_001032355.1 hypothetical protein -
  AS86_RS13495 (AS86_1581) abrB 1556897..1557175 (-) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AS86_RS13500 (AS86_1582) - 1557316..1558195 (-) 880 Protein_1567 helix-turn-helix domain-containing protein -
  AS86_RS13505 (AS86_1584) - 1558573..1558824 (+) 252 WP_000821942.1 response regulator transcription factor -
  AS86_RS13510 (AS86_1585) - 1558965..1559570 (-) 606 WP_000527414.1 hypothetical protein -
  AS86_RS13515 (AS86_1586) - 1559596..1560405 (-) 810 WP_000678376.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=128784 AS86_RS13495 WP_000842214.1 1556897..1557175(-) (abrB) [Bacillus thuringiensis HD1002]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=128784 AS86_RS13495 WP_000842214.1 1556897..1557175(-) (abrB) [Bacillus thuringiensis HD1002]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5

Multiple sequence alignment