Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BF38_RS19230 Genome accession   NZ_CP009335
Coordinates   3088109..3088396 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus thuringiensis strain HD1011     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083109..3093396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS19210 (BF38_3209) - 3084284..3084481 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  BF38_RS19215 (BF38_3210) - 3084513..3084974 (+) 462 WP_000024996.1 NUDIX hydrolase -
  BF38_RS19220 (BF38_3211) nadE 3085022..3085840 (-) 819 WP_000174880.1 ammonia-dependent NAD(+) synthetase -
  BF38_RS19225 (BF38_3212) - 3086112..3087992 (+) 1881 WP_001026017.1 FtsX-like permease family protein -
  BF38_RS19230 (BF38_3213) abrB 3088109..3088396 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BF38_RS19235 (BF38_3214) - 3088545..3088865 (+) 321 WP_000239256.1 helix-turn-helix domain-containing protein -
  BF38_RS19240 (BF38_3215) - 3088904..3089740 (+) 837 WP_229137348.1 IS3 family transposase -
  BF38_RS19245 (BF38_3216) - 3089992..3090942 (+) 951 WP_001089082.1 serine protease -
  BF38_RS19250 (BF38_3217) - 3090983..3091291 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  BF38_RS19255 (BF38_3218) - 3091399..3092334 (+) 936 WP_000877936.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=128698 BF38_RS19230 WP_000648331.1 3088109..3088396(+) (abrB) [Bacillus thuringiensis strain HD1011]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=128698 BF38_RS19230 WP_000648331.1 3088109..3088396(+) (abrB) [Bacillus thuringiensis strain HD1011]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment