Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABE83_RS20790 Genome accession   NZ_CP011522
Coordinates   4952608..4954020 (-) Length   470 a.a.
NCBI ID   WP_019764912.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4947608..4959020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS20770 (ABE83_20815) - 4948231..4949028 (-) 798 WP_053560692.1 SigE family RNA polymerase sigma factor -
  ABE83_RS20775 (ABE83_20820) - 4949189..4950118 (-) 930 WP_239009196.1 A/G-specific adenine glycosylase -
  ABE83_RS20780 (ABE83_20825) - 4950370..4951224 (+) 855 WP_203228263.1 hypothetical protein -
  ABE83_RS20785 (ABE83_20830) disA 4951402..4952526 (-) 1125 WP_019764911.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ABE83_RS20790 (ABE83_20835) radA/sms 4952608..4954020 (-) 1413 WP_019764912.1 DNA repair protein RadA Machinery gene
  ABE83_RS36525 (ABE83_20840) - 4954189..4956228 (+) 2040 WP_239009197.1 hypothetical protein -
  ABE83_RS20800 (ABE83_20845) - 4956375..4957217 (-) 843 WP_019763451.1 hypothetical protein -
  ABE83_RS20805 (ABE83_20850) - 4957257..4958207 (+) 951 WP_029395202.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49525.60 Da        Isoelectric Point: 8.0046

>NTDB_id=128690 ABE83_RS20790 WP_019764912.1 4952608..4954020(-) (radA/sms) [Streptomyces sp. CFMR 7 strain CFMR-7]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAISDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=128690 ABE83_RS20790 WP_019764912.1 4952608..4954020(-) (radA/sms) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACCGCGGCCG
GGCGGGTCTCCACCGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACGGCGCGCTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTCGTGCTGCTGGCCGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAATCCGCCAGCC
AGGTCCGGCTGCGGGCCGACCGGATCCGGGCGATCAGCGACCACCTCTACCTCGCGGCGGAGACCGATCTCTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCGGACCCCTCTGGCCTCTTCCTGACCCGGCGCGACGTCGCCGTCC
CGGGCACCTGCCTCACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTCCAGGCGCTCACGGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACCGTCGGCGGGGTGAAGCTCACCGAGCCCGCCGCCGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTCGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGCGTGCAGCGGCGGCTGGCCGAGGCCCACCGCCTCGGCTTCACCCACGCCCT
GGTGCCGACCGACCCGGGGCGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAGGAGGCACCACAGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

44.755

91.277

0.409
  radA Streptococcus pneumoniae D39

44.755

91.277

0.409
  radA Streptococcus pneumoniae R6

44.755

91.277

0.409
  radA Streptococcus pneumoniae TIGR4

44.755

91.277

0.409
  radA Streptococcus mitis SK321

44.755

91.277

0.409
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406

Multiple sequence alignment