Detailed information NTG0128683

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ABE83_RS19545
• Genome accession: NZ_CP011522
• Coordinates: 4655360..4657975 (+)
• Length: 871 a.a.
• NCBI ID: WP_053560519.1
• Uniprot ID: -
• Organism: Streptomyces sp. CFMR 7 strain CFMR-7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4650360..4662975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABE83_RS19515 (ABE83_19560)	-	4651266..4651721 (+)	456	WP_019763870.1	helix-turn-helix domain-containing protein	-
ABE83_RS19520 (ABE83_19565)	-	4651875..4652864 (-)	990	WP_053560518.1	helix-turn-helix transcriptional regulator	-
ABE83_RS19525 (ABE83_19570)	-	4653040..4653885 (-)	846	WP_018489586.1	hypothetical protein	-
ABE83_RS37320	-	4654034..4654339 (+)	306	WP_229865776.1	hypothetical protein	-
ABE83_RS19535 (ABE83_19580)	-	4654336..4654656 (+)	321	WP_015609572.1	hypothetical protein	-
ABE83_RS19540 (ABE83_19585)	-	4654778..4655179 (-)	402	WP_029395306.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
ABE83_RS19545 (ABE83_19590)	clpC	4655360..4657975 (+)	2616	WP_053560519.1	ATP-dependent chaperone ClpB	Regulator
ABE83_RS19550 (ABE83_19595)	-	4658194..4658745 (+)	552	WP_053560520.1	YbjN domain-containing protein	-
ABE83_RS19555 (ABE83_19600)	-	4658818..4660002 (-)	1185	WP_053560521.1	pyridoxal phosphate-dependent aminotransferase	-
ABE83_RS19560 (ABE83_19605)	-	4660221..4660505 (+)	285	WP_239009184.1	hypothetical protein	-
ABE83_RS19565 (ABE83_19610)	-	4660896..4661417 (+)	522	WP_019761393.1	DUF2617 family protein	-

Sequence

Protein

• Length: 871 a.a.
• Molecular weight: 94986.50 Da
• Isoelectric Point: 4.7290

>NTDB_id=128683 ABE83_RS19545 WP_053560519.1 4655360..4657975(+) (clpC) [Streptomyces sp. CFMR 7 strain CFMR-7]
MDAELTNKSRDAINAAGDRAVKEGHPDLTPGHLLLALLGGQDNENITDLLAAVEADQAVVRAGTEKLLGSLPSVTGSTVA
PPQPNRELLAVIQDAAQRAKELGDEYLSTEHLLIGIAAKGGRAGEILDGQGATAKKLLAAFETSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAARDGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRSVDRLRMEELALKNESDAASKQRLEKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDAASKLLYGEIPGLERELEEAAEAEQEASKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMESELGKRLIGQTEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQFLMDPLVKPEVKKEQVLEVVRASFKPEFINRLDDLVVFSALSGDELAHIAGLQIDRLAKRLADRRLTLDVTPE
ALAWLAQEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEIRDGDTVRVDRAREEDEGGLTVGPVSPASPAS

Nucleotide

• Length: 2616 bp

>NTDB_id=128683 ABE83_RS19545 WP_053560519.1 4655360..4657975(+) (clpC) [Streptomyces sp. CFMR 7 strain CFMR-7]
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCCATCAACGCGGCCGGTGACCGGGCCGTGAAGGAGGGGCACCCCGA
CCTCACCCCCGGCCATCTGCTCCTCGCACTGCTGGGGGGCCAGGACAACGAGAACATCACCGATCTGCTCGCCGCCGTCG
AGGCCGACCAGGCCGTCGTGCGCGCCGGGACCGAGAAGCTGCTCGGCTCCCTGCCCAGCGTCACCGGCTCCACCGTCGCC
CCGCCGCAGCCCAACCGTGAGCTGCTGGCCGTGATCCAGGACGCGGCCCAGCGGGCGAAGGAGCTGGGCGACGAGTACCT
CTCCACCGAGCACCTGCTCATCGGCATCGCCGCGAAGGGCGGGCGCGCCGGTGAGATCCTCGACGGACAGGGGGCCACCG
CCAAGAAGCTGCTGGCCGCATTCGAGACGAGCAGGGGAGGGCGCCGGGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACGGCCGCCGCGCGCGACGGAAAGCTGGACCCGGTCATCGGCCGCGACCAGGA
GATCCGCCGCGTCGTGCAGGTGCTCTCGCGCCGGACGAAGAACAACCCGGTGCTCATCGGTGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAAGGGCTCGCCCAGCGCATCGTCAAGGGCGACGTCCCCGAGAGCCTGAAGAACAAGCGGCTCGTCTCG
CTGGACCTCGGCGCGATGGTCGCGGGTGCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGACCGTTCTCTCCGAGAT
CAAGGAGAGCGACGGCCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGTGCGGGCGGCGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTGGCCGAGCCCTCCGTCGAGGA
CACCATCGCCATCCTCCGCGGCCTCAAGGGCCGTTACGAGGCCCACCACAAGGTCCAGATCGCGGACTCGGCGCTCGTCG
CCGCCGCCACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCC
TCCCGGCTCCGTATGGAGATCGACTCCTCGCCGCTGGAGATCGACGAACTCCAGCGCTCCGTCGACCGGTTGCGCATGGA
GGAGCTGGCCCTCAAGAACGAGTCCGACGCCGCCTCCAAGCAGCGGCTGGAGAAGCTGCGCCGCGACCTCGCGGACAAGG
AGGAGGAGCTGCGCGGCCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTCGGTGAGCTGAAGGAGCGC
CTCGACGAGCTGCGCGGCCAGGCCGAACGGGCCCAGCGCGACGGTGACTTCGACGCCGCCTCCAAGCTGCTGTACGGGGA
GATCCCGGGTCTGGAGCGGGAGTTGGAGGAGGCCGCCGAGGCGGAGCAGGAGGCCTCCAAGGACACCATGGTCAAGGAGG
AGGTCGGGCCGGACGACATCGCGGACGTCGTCGGCGCCTGGACCGGCATCCCGGCCGGGCGGCTGCTGGAGGGCGAGACC
CAGAAGCTGCTGCGGATGGAATCGGAGCTGGGCAAGCGGCTGATCGGCCAGACCGAGGCCGTGCAGGCCGTCTCCGACGC
CGTACGCCGTACGCGCGCCGGGATCGCGGACCCCGACCGGCCCACCGGGTCGTTCCTCTTCCTCGGCCCCACCGGCGTCG
GCAAGACCGAGCTGGCCAAGGCGCTGGCGGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTCGCCCGCCTGGTCGGTGCCCCGCCCGGTTACGTCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCCGTCCGCCGCCGCCCGTACAGCGTCGTGCTCCTGGACGAGGTCGAGAAGGCCCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTCCTCGACGACGGCCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACCATCCTCGTCCTC
ACCTCCAACCTCGGCAGCCAGTTCCTGATGGACCCCCTGGTCAAGCCCGAGGTCAAGAAGGAGCAGGTCCTGGAAGTGGT
GCGGGCCTCCTTCAAGCCGGAGTTCATCAACCGGCTGGACGACCTGGTGGTCTTCTCGGCGCTCTCCGGCGACGAGCTGG
CCCACATCGCGGGCCTCCAGATCGACCGGCTGGCCAAGCGGCTCGCGGACCGGCGCCTCACCCTGGACGTCACCCCCGAG
GCGCTCGCCTGGCTCGCCCAGGAGGGCAACGACCCGGCGTACGGGGCACGCCCGCTGCGCCGCCTCATCCAGACGGCCAT
CGGGGACCGGCTCGCCAAGGAGATCCTCTCCGGCGAGATCCGGGACGGCGACACCGTACGGGTGGACCGCGCCCGGGAGG
AGGACGAGGGCGGCCTGACCGTGGGGCCGGTCTCCCCGGCCTCCCCGGCCTCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.06	99.541	0.439
clpC	Lactococcus lactis subsp. cremoris KW2	47.25	81.401	0.385
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.469	81.286	0.378