Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BF38_RS09365 Genome accession   NZ_CP009335
Coordinates   1212975..1213259 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain HD1011     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207975..1218259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS09330 (BF38_1249) tmk 1208129..1208755 (+) 627 WP_000677237.1 dTMP kinase -
  BF38_RS09335 (BF38_1250) holB 1208791..1209774 (+) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  BF38_RS09340 (BF38_1251) - 1209780..1210607 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  BF38_RS09345 (BF38_1252) yabA 1210622..1210972 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BF38_RS09350 (BF38_1253) - 1211093..1211833 (+) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BF38_RS09355 (BF38_1254) - 1211820..1212110 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  BF38_RS09360 (BF38_1255) rsmI 1212079..1212954 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BF38_RS09365 (BF38_1256) abrB 1212975..1213259 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BF38_RS09370 (BF38_1257) metG 1213750..1215732 (+) 1983 WP_000134147.1 methionine--tRNA ligase -
  BF38_RS09375 (BF38_1258) - 1215898..1216665 (+) 768 WP_000895821.1 TatD family hydrolase -
  BF38_RS09380 (BF38_1259) rnmV 1216880..1217437 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=128680 BF38_RS09365 WP_000843036.1 1212975..1213259(-) (abrB) [Bacillus thuringiensis strain HD1011]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=128680 BF38_RS09365 WP_000843036.1 1212975..1213259(-) (abrB) [Bacillus thuringiensis strain HD1011]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment