Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABE83_RS18225 Genome accession   NZ_CP011522
Coordinates   4354751..4355881 (+) Length   376 a.a.
NCBI ID   WP_053560348.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4349751..4360881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS18215 (ABE83_18255) dnaN 4352527..4353657 (+) 1131 WP_015609839.1 DNA polymerase III subunit beta -
  ABE83_RS18220 (ABE83_18260) gnd 4353800..4354684 (+) 885 WP_019763790.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ABE83_RS18225 (ABE83_18265) recF 4354751..4355881 (+) 1131 WP_053560348.1 DNA replication/repair protein RecF Machinery gene
  ABE83_RS18230 (ABE83_18270) - 4356103..4356597 (+) 495 WP_053562889.1 DciA family protein -
  ABE83_RS18235 (ABE83_18275) gyrB 4357040..4359109 (+) 2070 WP_029395233.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40695.35 Da        Isoelectric Point: 7.5640

>NTDB_id=128680 ABE83_RS18225 WP_053560348.1 4354751..4355881(+) (recF) [Streptomyces sp. CFMR 7 strain CFMR-7]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVTLEYRSSVGEDVA
AGRTREELYEQLIAALAGVRKQEIERGVTLVGPHRDDLVLSLRGMPAKGYASHGESWSYALALRLASYELLRAEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGALAGARYAVSAGEVARA

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=128680 ABE83_RS18225 WP_053560348.1 4354751..4355881(+) (recF) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAACCTCGTCGAGGCGATCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCCCTCGTGCGGATGGGTGCCGAGCGGGCCGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGATCGAGCTGGAGCTGAACCCCGGCCGCGCCAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTCGGCATCGTACGGACGGTGCTCTTCGCGCCGGAGGACCTCGCCCTCGTCAAGGGCGACCCCGGGGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGCTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGCCGCCACGGCGGCCGCTCCATGGACCTGTCCACCCTCGACGTCTG
GGACCAGCACCTGGGCCGGGTCGGCGCCGAGCTGCTCGCGCAGCGCCTGGACCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGCGGTCCGGTGACGCTGGAGTACCGCAGCTCGGTGGGCGAGGACGTGGCG
GCGGGCCGCACCCGCGAGGAGCTGTACGAGCAGTTGATCGCGGCGCTGGCCGGGGTCCGGAAGCAGGAGATCGAGCGCGG
GGTGACACTGGTCGGCCCGCACCGGGACGACCTGGTGCTCAGCCTGCGCGGGATGCCCGCTAAGGGGTACGCGAGCCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGCTGCGCGCCGAGGGCAATGAGCCGGTGCTC
GTGCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAGCAGGT
GCTCGTGACGGCGGCGGTGGCGGAGGACGTGCCGGGTGCGCTGGCGGGTGCGCGGTACGCGGTGTCGGCGGGCGAGGTGG
CGCGGGCATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.978

97.34

0.37

Multiple sequence alignment