Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AA953_RS20180 Genome accession   NZ_CP011495
Coordinates   4056234..4056749 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NCM3722 isolate K-12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4051234..4061749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA953_RS20155 (AA953_20165) ygaZ 4051633..4052370 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  AA953_RS20160 (AA953_20170) ygaH 4052360..4052695 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AA953_RS20165 (AA953_20175) emrR 4052786..4053316 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AA953_RS20170 (AA953_20180) emrA 4053443..4054615 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AA953_RS20175 (AA953_20185) emrB 4054632..4056170 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AA953_RS20180 (AA953_20190) luxS 4056234..4056749 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AA953_RS20185 (AA953_20195) gshA 4056899..4058455 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AA953_RS20190 (AA953_20200) yqaA 4058528..4058956 (-) 429 WP_001287454.1 YqaA family protein -
  AA953_RS20195 (AA953_20205) yqaB 4058953..4059519 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AA953_RS20225 (AA953_20240) csrA 4060977..4061162 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=128637 AA953_RS20180 WP_001130211.1 4056234..4056749(-) (luxS) [Escherichia coli strain NCM3722 isolate K-12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=128637 AA953_RS20180 WP_001130211.1 4056234..4056749(-) (luxS) [Escherichia coli strain NCM3722 isolate K-12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment