Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BD64_RS28675 Genome accession   NZ_CP009325
Coordinates   5199100..5200227 (-) Length   375 a.a.
NCBI ID   WP_000470753.1    Uniprot ID   Q6I535
Organism   Bacillus anthracis strain PAK-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5194100..5205227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD64_RS28665 (BD64_5555) gyrA 5194579..5197050 (-) 2472 WP_001282851.1 DNA gyrase subunit A -
  BD64_RS28670 (BD64_5556) gyrB 5197139..5199061 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BD64_RS28675 (BD64_5557) recF 5199100..5200227 (-) 1128 WP_000470753.1 DNA replication/repair protein RecF Machinery gene
  BD64_RS28680 (BD64_5558) yaaA 5200240..5200452 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  BD64_RS28685 (BD64_5559) dnaN 5200580..5201719 (-) 1140 WP_001212526.1 DNA polymerase III subunit beta -
  BD64_RS28690 (BD64_5560) dnaA 5201898..5203238 (-) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  BD64_RS28695 (BD64_5561) rpmH 5203803..5203937 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  BD64_RS28700 (BD64_5562) rnpA 5204014..5204373 (+) 360 WP_000726628.1 ribonuclease P protein component -
  BD64_RS28705 (BD64_5563) spoIIIJ 5204413..5205180 (+) 768 WP_000727748.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.71 Da        Isoelectric Point: 6.9850

>NTDB_id=128566 BD64_RS28675 WP_000470753.1 5199100..5200227(-) (recF) [Bacillus anthracis strain PAK-1]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=128566 BD64_RS28675 WP_000470753.1 5199100..5200227(-) (recF) [Bacillus anthracis strain PAK-1]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6I535

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment