Detailed information NTG0128533

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AA958_RS17635
• Genome accession: NZ_CP011492
• Coordinates: 4146679..4149285 (+)
• Length: 868 a.a.
• NCBI ID: WP_047017029.1
• Uniprot ID: -
• Organism: Streptomyces sp. CNQ-509
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4141679..4154285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA958_RS17615 (AA958_17615)	-	4142266..4142583 (+)	318	WP_253911330.1	helix-turn-helix transcriptional regulator	-
AA958_RS17620 (AA958_17620)	-	4142801..4143766 (-)	966	WP_047017027.1	hypothetical protein	-
AA958_RS17625 (AA958_17625)	-	4143774..4144754 (-)	981	WP_047017028.1	response regulator transcription factor	-
AA958_RS17630 (AA958_17630)	-	4144786..4145664 (-)	879	WP_367648432.1	hypothetical protein	-
AA958_RS17635 (AA958_17635)	clpC	4146679..4149285 (+)	2607	WP_047017029.1	ATP-dependent chaperone ClpB	Regulator
AA958_RS17640 (AA958_17640)	-	4149446..4150012 (+)	567	WP_047017030.1	YbjN domain-containing protein	-
AA958_RS17645 (AA958_17645)	-	4150120..4150878 (-)	759	WP_047017031.1	S9 family peptidase	-
AA958_RS17650 (AA958_17650)	kynU	4150865..4152244 (-)	1380	WP_047017032.1	kynureninase	-
AA958_RS17655 (AA958_17655)	-	4152237..4153127 (-)	891	WP_047017033.1	tryptophan 2,3-dioxygenase family protein	-
AA958_RS17660 (AA958_17660)	-	4153323..4153736 (-)	414	WP_047017034.1	DUF3151 domain-containing protein	-

Sequence

Protein

• Length: 868 a.a.
• Molecular weight: 94970.70 Da
• Isoelectric Point: 4.7075

>NTDB_id=128533 AA958_RS17635 WP_047017029.1 4146679..4149285(+) (clpC) [Streptomyces sp. CNQ-509]
MDAELTNKSQEAIAGANSRAVSGGNPDITPVHLLLALLDVADNENLQDLLAAVDADQAAVRSGAEALLGGLPSVQGATVS
PPRADRELLAVVADAAERARKLGDQYVSTEHLLIGVAAEGGAAKELLKKQGASAKALVQAFEKIRGDRRVTTKNPEGTYQ
ALGKFGTDLTAAARDGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVA
LDLGAMVAGAKYRGEFEERLKTVLAEIRESEGQVITFIDELHTVVGAGAGGESAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDAALERRFQQVLVAEPTVEDTIAILRGLKGRYEAHHKVVIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPTEIDELQRAVDRLRMEELALKNESDVASRERLERLQRDLADKEEELRGLTARWEKEKQGLNRVGELKER
LDELRGTAERAQRDGDFDTASKLLYGELPALERELEEASAAEEEVKRDTMVKEEVGSDDIADVISSWTGIPAGRLLEGET
QKLLRMEEELGRRLIGQDVAVRAVSDAVRRTRAGIADPNRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVILLDEMEKAHTEVFDILLQVLDDGRLTDGQGRTVDFRNTILIL
TSNLGSTFLVDPMIKDEQKREGVLETVRKVFRPEFLNRLDDLVVFNALGGDQLKRIAAIQLAHLQERLSERRLTLEVSDA
ALAWLARLGVPEDEPEPDLSYGARPLRRLVQTAIGDQLAKEILAGEVRDGDTVWVDVLGDQLLVGAAQ

Nucleotide

• Length: 2607 bp

>NTDB_id=128533 AA958_RS17635 WP_047017029.1 4146679..4149285(+) (clpC) [Streptomyces sp. CNQ-509]
GTGGATGCGGAGCTGACCAACAAGAGCCAGGAAGCGATCGCCGGCGCCAACAGCCGTGCCGTGTCCGGCGGCAATCCGGA
CATCACCCCCGTACATCTGCTGCTCGCCCTGCTCGACGTGGCGGACAACGAGAACCTTCAGGACCTGCTGGCCGCCGTCG
ACGCCGACCAGGCCGCCGTGCGGTCCGGGGCCGAGGCGCTGCTCGGCGGGTTGCCCAGTGTGCAGGGGGCGACCGTGTCG
CCGCCGCGGGCGGACCGGGAGTTGCTCGCCGTCGTGGCCGATGCCGCCGAGCGGGCGCGGAAGCTCGGCGATCAGTATGT
GTCGACCGAGCACCTGCTCATCGGGGTCGCCGCCGAGGGCGGTGCCGCCAAGGAGTTGCTGAAGAAGCAGGGGGCGAGCG
CCAAGGCGCTCGTGCAGGCGTTCGAGAAGATCCGCGGCGACCGGCGCGTGACCACGAAGAACCCCGAGGGTACGTATCAG
GCGCTGGGCAAGTTCGGCACCGACCTCACCGCCGCCGCCCGCGACGGCAAGCTCGACCCGGTCATCGGGCGGGACCAGGA
GATCCGCCGCGTCGTGCAGGTGCTCTCCCGGCGTACGAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGGAAGA
CCGCCGTCGTCGAGGGCCTCGCGCAGCGGATCGTGAAGGGGGACGTGCCCGAGAGCCTGAAGAACAAGCGGCTCGTCGCG
CTCGACCTCGGCGCCATGGTCGCCGGGGCGAAGTACCGGGGCGAGTTCGAGGAGCGGCTGAAGACCGTGCTCGCCGAGAT
CCGGGAGAGTGAAGGACAGGTCATCACGTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGCGCGGGCGGCGAGTCCG
CCATGGACGCCGGCAACATGCTGAAGCCCATGCTCGCCCGCGGCGAGCTGCGCATGGTCGGTGCGACGACCCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCAGGTACTTGTCGCCGAGCCCACCGTCGAGGA
CACCATCGCGATCCTCCGCGGCCTGAAGGGGCGGTATGAGGCCCACCACAAGGTCGTCATCGCCGACTCCGCGCTCGTCG
CCGCCGCGACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTCGTCGACGAGGCCGCC
TCCCGGCTCCGGATGGAGATCGACTCCTCGCCCACCGAGATCGACGAGCTCCAGCGCGCCGTCGACCGCCTCCGGATGGA
GGAGCTGGCGCTGAAGAACGAGTCGGACGTCGCCTCCCGCGAGCGGCTGGAGCGGCTCCAGCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTGGGCGAGCTGAAGGAGCGG
CTGGACGAGCTGCGCGGCACGGCCGAGCGCGCGCAGCGCGACGGTGACTTCGACACCGCCTCCAAGCTCCTCTACGGCGA
ACTGCCCGCCCTCGAACGCGAGCTGGAGGAGGCGTCGGCCGCGGAGGAGGAGGTCAAGCGGGACACGATGGTCAAGGAGG
AGGTCGGCTCCGACGACATCGCCGACGTCATCTCCTCCTGGACCGGCATCCCCGCGGGCAGGCTGCTGGAGGGCGAGACG
CAGAAGCTGCTGCGCATGGAGGAGGAGCTGGGCCGGCGGCTCATCGGGCAGGACGTGGCCGTACGGGCCGTCTCCGACGC
CGTGCGCCGCACCCGCGCCGGCATCGCCGACCCCAACCGGCCGACGGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCG
GCAAGACCGAGCTGGCGAAGGCGCTGGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACTCCGTCTCCCGCCTGGTCGGCGCGCCCCCGGGGTACGTCGGGTACGAGGAGGGCGGTCAGCTCAC
GGAGGCCGTACGGCGGCGCCCGTACTCGGTGATCCTGCTGGACGAGATGGAGAAGGCGCACACCGAGGTCTTCGACATCC
TGCTCCAGGTGCTGGACGACGGGCGGCTGACGGACGGTCAGGGCCGTACGGTCGACTTCCGCAACACCATCCTCATCCTC
ACCTCCAACCTCGGCTCCACCTTCCTCGTCGATCCGATGATCAAGGACGAGCAGAAGCGGGAGGGGGTGCTGGAGACGGT
GCGGAAGGTCTTCCGGCCCGAGTTCCTCAACCGGCTCGACGATCTCGTCGTCTTCAACGCGCTCGGCGGCGACCAGCTCA
AGCGCATCGCCGCCATCCAGCTCGCCCATCTGCAGGAACGGCTCTCGGAACGCCGGCTCACGCTGGAGGTCAGCGACGCG
GCGCTGGCCTGGCTGGCGCGCCTGGGCGTCCCGGAGGACGAGCCGGAGCCGGACCTCAGCTACGGGGCGCGGCCGCTGCG
GCGGCTGGTGCAGACGGCGATCGGGGACCAGCTCGCGAAGGAGATCCTGGCGGGCGAGGTGCGCGACGGGGACACCGTGT
GGGTGGACGTGCTCGGGGATCAGTTGCTGGTCGGCGCGGCGCAGTAG

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-855)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.795	100	0.464
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.745	97.696	0.408
clpC	Lactococcus lactis subsp. cremoris KW2	47.067	80.53	0.379
clpE	Streptococcus mutans UA159	45.954	79.724	0.366