Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AA958_RS16750 | Genome accession | NZ_CP011492 |
| Coordinates | 3955840..3958464 (-) | Length | 874 a.a. |
| NCBI ID | WP_047016889.1 | Uniprot ID | - |
| Organism | Streptomyces sp. CNQ-509 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3950840..3963464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA958_RS16745 (AA958_16745) | rho | 3954562..3955752 (+) | 1191 | WP_047016888.1 | transcription termination factor Rho | - |
| AA958_RS16750 (AA958_16750) | clpC | 3955840..3958464 (-) | 2625 | WP_047016889.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| AA958_RS16755 (AA958_16755) | - | 3958578..3959186 (-) | 609 | WP_047016890.1 | CGNR zinc finger domain-containing protein | - |
| AA958_RS16760 (AA958_16760) | - | 3959388..3960710 (+) | 1323 | WP_047016891.1 | MFS transporter | - |
| AA958_RS16765 (AA958_16765) | - | 3960877..3961674 (+) | 798 | WP_047016892.1 | SAM-dependent methyltransferase | - |
| AA958_RS16770 (AA958_16770) | - | 3961787..3963013 (-) | 1227 | WP_047016893.1 | lipase family protein | - |
Sequence
Protein
Download Length: 874 a.a. Molecular weight: 94414.09 Da Isoelectric Point: 4.8091
>NTDB_id=128530 AA958_RS16750 WP_047016889.1 3955840..3958464(-) (clpC) [Streptomyces sp. CNQ-509]
MSLSPLGSYGSSDPFSELLNRFFGMSPATSPPAVQRVPIGRLLTDSARELIGRAQRRAEEDGSVDLDTEHLLWACTQVDP
ARSVLAHAGADPDELARAVAEALPGEGSAASAEPELTPAAKRVLRGAVARSQANGTSYIGPEHILGALLDDPDAGAARLL
GAYGTDTDRLRTGAEAATAHRAAGPATAAGRAAAPGGAQPQSETPTLDEYGRDITAEARAGRLDPVVGRAEEIEQTVEIL
SRRTKNNPVLIGEPGVGKTAIVEGLAQRIESGDVPQTLAGKRVVGLDLAGLVAGSKYRGEFEERLKKVIEEVKNTESSTI
LFIDELHTVVGAGSGGEGAMDAGNMLKPALARGELHVVGATTIDEYRKHVEKDAALERRFQPVLVPEPTVAETVQILEGL
RDSYEAHHQVRFTDEALAAAAELSDRYVSDRFLPDKAIDLVDQAGARVRLRSMGRSTEVADREDRLAKLRREKDEAVAAE
RYEKASQLKERIAETEAELAGVEERREGVMEVTADDIAGVLSRSTGIPVAQLTESEKDKLLKLEDALHDRVVGQDEAVVA
VAEAVRRGRAGMSDPDRPTGSFLFLGPTGVGKTELAKVLADLLFGDENRMIRFDMSEFQERHTVSRLLGAPPGYVGYDEA
GQLTEKVRRRPYSVLLFDEIEKAHPDVFSALLQVLEDGRLTDAQGRTVDFRNTVVIMTSNIGAQRLLAHKGRVDEIRDEL
MEDLRGRFLPEFLNRIDEVIIFHGLTADDLASVVDLLLDRSRRRLRAQEVDLEVTEAAKKRLVALGHQPEFGARPLRRTL
QRELDNRIANLLLDGSVRPGDTVLADVDGESGELVCTLARPRSSKAEKAEKAEKAEGAGAEREEGGPTGLRDAA
MSLSPLGSYGSSDPFSELLNRFFGMSPATSPPAVQRVPIGRLLTDSARELIGRAQRRAEEDGSVDLDTEHLLWACTQVDP
ARSVLAHAGADPDELARAVAEALPGEGSAASAEPELTPAAKRVLRGAVARSQANGTSYIGPEHILGALLDDPDAGAARLL
GAYGTDTDRLRTGAEAATAHRAAGPATAAGRAAAPGGAQPQSETPTLDEYGRDITAEARAGRLDPVVGRAEEIEQTVEIL
SRRTKNNPVLIGEPGVGKTAIVEGLAQRIESGDVPQTLAGKRVVGLDLAGLVAGSKYRGEFEERLKKVIEEVKNTESSTI
LFIDELHTVVGAGSGGEGAMDAGNMLKPALARGELHVVGATTIDEYRKHVEKDAALERRFQPVLVPEPTVAETVQILEGL
RDSYEAHHQVRFTDEALAAAAELSDRYVSDRFLPDKAIDLVDQAGARVRLRSMGRSTEVADREDRLAKLRREKDEAVAAE
RYEKASQLKERIAETEAELAGVEERREGVMEVTADDIAGVLSRSTGIPVAQLTESEKDKLLKLEDALHDRVVGQDEAVVA
VAEAVRRGRAGMSDPDRPTGSFLFLGPTGVGKTELAKVLADLLFGDENRMIRFDMSEFQERHTVSRLLGAPPGYVGYDEA
GQLTEKVRRRPYSVLLFDEIEKAHPDVFSALLQVLEDGRLTDAQGRTVDFRNTVVIMTSNIGAQRLLAHKGRVDEIRDEL
MEDLRGRFLPEFLNRIDEVIIFHGLTADDLASVVDLLLDRSRRRLRAQEVDLEVTEAAKKRLVALGHQPEFGARPLRRTL
QRELDNRIANLLLDGSVRPGDTVLADVDGESGELVCTLARPRSSKAEKAEKAEKAEGAGAEREEGGPTGLRDAA
Nucleotide
Download Length: 2625 bp
>NTDB_id=128530 AA958_RS16750 WP_047016889.1 3955840..3958464(-) (clpC) [Streptomyces sp. CNQ-509]
ATGTCCCTCTCCCCCCTCGGCTCCTACGGCTCCTCCGACCCGTTCTCCGAGCTGCTCAACCGCTTCTTCGGCATGTCCCC
CGCCACCTCGCCGCCCGCCGTCCAGCGCGTGCCCATCGGGCGGCTCCTCACCGACTCCGCGCGCGAGCTGATCGGCCGCG
CCCAGCGCCGCGCCGAGGAGGACGGCAGCGTCGACCTCGACACCGAGCACCTGCTCTGGGCCTGCACCCAGGTGGACCCC
GCGCGCTCCGTCCTCGCCCACGCCGGGGCCGACCCCGACGAGCTGGCCAGGGCCGTCGCCGAGGCGCTGCCGGGGGAGGG
GAGCGCCGCGTCGGCGGAGCCGGAGCTGACGCCCGCGGCGAAGCGGGTGCTCCGCGGCGCGGTGGCCCGCTCGCAGGCCA
ACGGCACCTCGTACATCGGCCCCGAGCACATCCTCGGCGCCCTCCTCGACGACCCGGACGCCGGCGCCGCCCGGCTGCTC
GGCGCGTACGGCACGGACACCGACCGGCTCCGTACCGGCGCGGAAGCCGCCACCGCCCACCGCGCCGCGGGCCCCGCCAC
GGCCGCGGGCCGCGCCGCCGCCCCGGGCGGTGCGCAGCCGCAGAGCGAGACCCCGACGCTTGACGAGTACGGCCGCGACA
TCACCGCCGAGGCGCGCGCCGGCCGGCTCGACCCCGTCGTGGGCCGCGCCGAGGAGATCGAGCAGACCGTCGAGATCCTC
TCCCGCCGCACCAAGAACAACCCGGTCCTCATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTCGAGGGCCTGGCGCA
GCGCATCGAGTCGGGCGACGTGCCGCAGACGCTCGCCGGCAAGCGCGTCGTCGGCCTGGACCTGGCCGGTCTTGTCGCGG
GCTCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGAAGGTCATCGAGGAGGTGAAGAACACCGAGAGCAGCACGATC
CTCTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGATCCGGCGGCGAGGGCGCCATGGACGCGGGCAACATGCTCAA
GCCCGCGCTCGCCCGCGGCGAGCTGCACGTCGTCGGCGCGACGACGATCGACGAGTACCGCAAGCACGTCGAGAAGGACG
CCGCGCTGGAGCGCCGCTTCCAGCCGGTGCTGGTGCCGGAGCCGACCGTCGCGGAGACCGTGCAGATCCTCGAAGGGCTG
CGGGACTCGTACGAGGCACACCACCAGGTCCGCTTCACCGACGAGGCGCTGGCCGCCGCAGCCGAGCTGTCCGACCGCTA
CGTCTCCGACCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGACCAGGCGGGCGCGCGCGTCCGGCTGCGCTCGATGG
GCCGCAGCACCGAGGTGGCCGACCGCGAGGACCGGCTGGCGAAGCTGCGCCGGGAGAAGGACGAGGCGGTCGCGGCGGAG
AGGTACGAGAAGGCGTCGCAGCTCAAGGAGCGGATCGCCGAGACGGAGGCGGAGCTGGCGGGCGTCGAGGAGCGGCGCGA
GGGCGTGATGGAGGTGACCGCGGACGACATCGCCGGGGTGCTGTCGCGCTCGACCGGTATCCCCGTCGCGCAGTTGACGG
AGAGCGAGAAGGACAAGCTGCTGAAGCTGGAGGACGCCCTGCACGACCGGGTCGTCGGGCAGGACGAGGCGGTGGTGGCG
GTCGCCGAGGCGGTACGCCGCGGGCGGGCCGGCATGAGCGACCCGGACCGGCCGACCGGTTCGTTCCTCTTCCTCGGCCC
GACCGGCGTGGGCAAGACGGAGCTGGCGAAGGTGCTGGCGGACCTGCTCTTCGGCGACGAGAACCGGATGATCCGCTTCG
ATATGAGCGAGTTCCAGGAGCGGCACACGGTCTCGCGGCTGCTGGGCGCCCCGCCCGGCTACGTCGGCTACGACGAGGCC
GGGCAGTTGACGGAGAAGGTGCGCAGGCGCCCGTACAGCGTGCTGCTCTTCGACGAGATCGAGAAGGCGCACCCGGACGT
CTTCTCCGCACTGCTCCAGGTGCTGGAGGACGGGCGGCTGACGGACGCGCAGGGGCGGACGGTCGACTTCCGCAACACCG
TCGTCATCATGACCTCGAACATCGGCGCCCAGCGGCTCCTCGCCCACAAGGGCCGTGTCGACGAGATCCGCGACGAGCTG
ATGGAGGACCTGCGCGGGCGCTTCCTGCCCGAGTTCCTCAACCGCATCGACGAGGTCATCATCTTCCACGGGCTGACGGC
CGACGACCTCGCCTCGGTGGTGGACCTGCTGCTGGACCGCAGCCGGCGGCGGCTGCGCGCCCAGGAGGTCGACCTGGAGG
TGACGGAGGCGGCGAAGAAGCGCCTCGTCGCGCTTGGGCACCAGCCGGAGTTCGGCGCCCGGCCGCTGCGCCGCACGCTC
CAGCGGGAGCTGGACAACCGGATCGCGAACCTGCTGCTCGACGGCTCGGTACGGCCCGGTGACACGGTGCTGGCGGACGT
GGACGGGGAGAGCGGCGAACTGGTGTGCACGCTGGCCCGGCCGCGGAGCTCGAAGGCGGAGAAGGCGGAGAAGGCGGAGA
AGGCGGAAGGGGCCGGGGCGGAGCGCGAGGAGGGCGGGCCGACGGGGCTGCGGGACGCGGCGTAG
ATGTCCCTCTCCCCCCTCGGCTCCTACGGCTCCTCCGACCCGTTCTCCGAGCTGCTCAACCGCTTCTTCGGCATGTCCCC
CGCCACCTCGCCGCCCGCCGTCCAGCGCGTGCCCATCGGGCGGCTCCTCACCGACTCCGCGCGCGAGCTGATCGGCCGCG
CCCAGCGCCGCGCCGAGGAGGACGGCAGCGTCGACCTCGACACCGAGCACCTGCTCTGGGCCTGCACCCAGGTGGACCCC
GCGCGCTCCGTCCTCGCCCACGCCGGGGCCGACCCCGACGAGCTGGCCAGGGCCGTCGCCGAGGCGCTGCCGGGGGAGGG
GAGCGCCGCGTCGGCGGAGCCGGAGCTGACGCCCGCGGCGAAGCGGGTGCTCCGCGGCGCGGTGGCCCGCTCGCAGGCCA
ACGGCACCTCGTACATCGGCCCCGAGCACATCCTCGGCGCCCTCCTCGACGACCCGGACGCCGGCGCCGCCCGGCTGCTC
GGCGCGTACGGCACGGACACCGACCGGCTCCGTACCGGCGCGGAAGCCGCCACCGCCCACCGCGCCGCGGGCCCCGCCAC
GGCCGCGGGCCGCGCCGCCGCCCCGGGCGGTGCGCAGCCGCAGAGCGAGACCCCGACGCTTGACGAGTACGGCCGCGACA
TCACCGCCGAGGCGCGCGCCGGCCGGCTCGACCCCGTCGTGGGCCGCGCCGAGGAGATCGAGCAGACCGTCGAGATCCTC
TCCCGCCGCACCAAGAACAACCCGGTCCTCATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTCGAGGGCCTGGCGCA
GCGCATCGAGTCGGGCGACGTGCCGCAGACGCTCGCCGGCAAGCGCGTCGTCGGCCTGGACCTGGCCGGTCTTGTCGCGG
GCTCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGAAGGTCATCGAGGAGGTGAAGAACACCGAGAGCAGCACGATC
CTCTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGATCCGGCGGCGAGGGCGCCATGGACGCGGGCAACATGCTCAA
GCCCGCGCTCGCCCGCGGCGAGCTGCACGTCGTCGGCGCGACGACGATCGACGAGTACCGCAAGCACGTCGAGAAGGACG
CCGCGCTGGAGCGCCGCTTCCAGCCGGTGCTGGTGCCGGAGCCGACCGTCGCGGAGACCGTGCAGATCCTCGAAGGGCTG
CGGGACTCGTACGAGGCACACCACCAGGTCCGCTTCACCGACGAGGCGCTGGCCGCCGCAGCCGAGCTGTCCGACCGCTA
CGTCTCCGACCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGACCAGGCGGGCGCGCGCGTCCGGCTGCGCTCGATGG
GCCGCAGCACCGAGGTGGCCGACCGCGAGGACCGGCTGGCGAAGCTGCGCCGGGAGAAGGACGAGGCGGTCGCGGCGGAG
AGGTACGAGAAGGCGTCGCAGCTCAAGGAGCGGATCGCCGAGACGGAGGCGGAGCTGGCGGGCGTCGAGGAGCGGCGCGA
GGGCGTGATGGAGGTGACCGCGGACGACATCGCCGGGGTGCTGTCGCGCTCGACCGGTATCCCCGTCGCGCAGTTGACGG
AGAGCGAGAAGGACAAGCTGCTGAAGCTGGAGGACGCCCTGCACGACCGGGTCGTCGGGCAGGACGAGGCGGTGGTGGCG
GTCGCCGAGGCGGTACGCCGCGGGCGGGCCGGCATGAGCGACCCGGACCGGCCGACCGGTTCGTTCCTCTTCCTCGGCCC
GACCGGCGTGGGCAAGACGGAGCTGGCGAAGGTGCTGGCGGACCTGCTCTTCGGCGACGAGAACCGGATGATCCGCTTCG
ATATGAGCGAGTTCCAGGAGCGGCACACGGTCTCGCGGCTGCTGGGCGCCCCGCCCGGCTACGTCGGCTACGACGAGGCC
GGGCAGTTGACGGAGAAGGTGCGCAGGCGCCCGTACAGCGTGCTGCTCTTCGACGAGATCGAGAAGGCGCACCCGGACGT
CTTCTCCGCACTGCTCCAGGTGCTGGAGGACGGGCGGCTGACGGACGCGCAGGGGCGGACGGTCGACTTCCGCAACACCG
TCGTCATCATGACCTCGAACATCGGCGCCCAGCGGCTCCTCGCCCACAAGGGCCGTGTCGACGAGATCCGCGACGAGCTG
ATGGAGGACCTGCGCGGGCGCTTCCTGCCCGAGTTCCTCAACCGCATCGACGAGGTCATCATCTTCCACGGGCTGACGGC
CGACGACCTCGCCTCGGTGGTGGACCTGCTGCTGGACCGCAGCCGGCGGCGGCTGCGCGCCCAGGAGGTCGACCTGGAGG
TGACGGAGGCGGCGAAGAAGCGCCTCGTCGCGCTTGGGCACCAGCCGGAGTTCGGCGCCCGGCCGCTGCGCCGCACGCTC
CAGCGGGAGCTGGACAACCGGATCGCGAACCTGCTGCTCGACGGCTCGGTACGGCCCGGTGACACGGTGCTGGCGGACGT
GGACGGGGAGAGCGGCGAACTGGTGTGCACGCTGGCCCGGCCGCGGAGCTCGAAGGCGGAGAAGGCGGAGAAGGCGGAGA
AGGCGGAAGGGGCCGGGGCGGAGCGCGAGGAGGGCGGGCCGACGGGGCTGCGGGACGCGGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51.169 |
93.021 |
0.476 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
45.99 |
91.304 |
0.42 |
| clpC | Streptococcus thermophilus LMD-9 |
43.985 |
94.165 |
0.414 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.804 |
93.249 |
0.408 |
| clpC | Streptococcus mutans UA159 |
42.927 |
93.021 |
0.399 |
| clpE | Streptococcus mutans UA159 |
51.807 |
75.973 |
0.394 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.492 |
73.455 |
0.386 |
| clpE | Streptococcus pneumoniae R6 |
50.375 |
76.316 |
0.384 |
| clpC | Streptococcus pneumoniae TIGR4 |
47.125 |
81.579 |
0.384 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.375 |
76.316 |
0.384 |
| clpE | Streptococcus pneumoniae Rx1 |
50.375 |
76.316 |
0.384 |
| clpE | Streptococcus pneumoniae D39 |
50.375 |
76.316 |
0.384 |
| clpC | Streptococcus pneumoniae D39 |
46.844 |
81.579 |
0.382 |
| clpC | Streptococcus pneumoniae Rx1 |
46.844 |
81.579 |
0.382 |