Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AA958_RS07290 Genome accession   NZ_CP011492
Coordinates   1755357..1756385 (-) Length   342 a.a.
NCBI ID   WP_047015412.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750357..1761385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS07260 (AA958_07260) - 1750700..1751308 (+) 609 WP_047015406.1 hypothetical protein -
  AA958_RS07265 (AA958_07265) - 1751400..1752740 (+) 1341 WP_047015407.1 MFS transporter -
  AA958_RS07270 (AA958_07270) - 1752837..1753070 (-) 234 WP_047015408.1 hypothetical protein -
  AA958_RS07275 (AA958_07275) map 1753149..1754009 (+) 861 WP_047015409.1 type I methionyl aminopeptidase -
  AA958_RS07280 (AA958_07280) - 1754095..1754292 (+) 198 Protein_1479 biliverdin-producing heme oxygenase -
  AA958_RS07285 (AA958_07285) - 1754340..1755332 (+) 993 WP_047015411.1 aldo/keto reductase -
  AA958_RS07290 (AA958_07290) cytR 1755357..1756385 (-) 1029 WP_047015412.1 LacI family DNA-binding transcriptional regulator Regulator
  AA958_RS07295 (AA958_07295) - 1756535..1757938 (+) 1404 WP_047015413.1 extracellular solute-binding protein -
  AA958_RS07300 (AA958_07300) - 1757978..1758910 (+) 933 WP_047015414.1 carbohydrate ABC transporter permease -
  AA958_RS07305 (AA958_07305) - 1758914..1759819 (+) 906 WP_047015415.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36434.75 Da        Isoelectric Point: 5.6903

>NTDB_id=128508 AA958_RS07290 WP_047015412.1 1755357..1756385(-) (cytR) [Streptomyces sp. CNQ-509]
MPGARLKDVAERAGVSIKTVSNVVRGAARVAEPTRERVLRAIDELGYRPHASARHLRTGRSGVIALAVPELVAPYFAELA
TCVIAAAKESGQTVLIEVTDGDPAEELRLACGLGDPLIDGVLLSPLGLDQTALAARERRVPLVLLGERDYEVPADHVLID
NVAAARDATRHLVGRGRRRIGVIGWQHDDRTTATALQRMQGHREALAEAGLAYDQALAPAVGSYTRAGGAAAMRELLALR
EPPDAVFCFTDMMASGAMRVAHDEGLAIPADLAVVGFDDIQEARYMVPSLTSVAPDKQELARLAVKALLARIEGPAEAPP
TTLLAPYELALRESSALPQDRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=128508 AA958_RS07290 WP_047015412.1 1755357..1756385(-) (cytR) [Streptomyces sp. CNQ-509]
GTGCCCGGGGCCCGCCTCAAGGACGTCGCAGAGCGCGCCGGTGTCTCGATCAAGACCGTCTCGAACGTGGTCCGCGGCGC
CGCGCGCGTCGCCGAGCCGACCCGCGAGCGCGTGCTGCGCGCCATCGACGAACTCGGCTACCGCCCGCACGCCTCCGCCC
GCCATCTGCGCACCGGCCGCAGCGGGGTCATCGCGCTTGCCGTACCGGAACTCGTCGCGCCCTACTTCGCGGAGCTGGCC
ACCTGCGTCATCGCCGCCGCCAAGGAGAGCGGGCAGACCGTCCTCATCGAGGTCACCGACGGTGATCCGGCGGAGGAGCT
GCGGCTGGCCTGCGGCCTCGGCGACCCGCTCATCGACGGCGTGCTCCTCAGCCCTCTCGGCCTGGACCAGACGGCGCTCG
CCGCCCGCGAGCGCCGCGTCCCGCTCGTGCTGCTCGGCGAGCGCGACTACGAGGTCCCCGCCGACCACGTGCTCATCGAC
AACGTCGCCGCCGCCCGCGACGCCACCCGGCACCTCGTCGGCCGCGGCCGCCGCCGCATCGGCGTCATCGGCTGGCAGCA
CGACGACCGCACGACGGCCACCGCCCTGCAGCGCATGCAGGGCCACCGCGAGGCGCTGGCCGAGGCGGGCCTCGCGTACG
ACCAGGCGCTGGCGCCCGCCGTGGGGTCGTACACCCGGGCGGGCGGGGCGGCGGCCATGCGGGAGCTGCTGGCGCTCCGG
GAGCCGCCCGACGCGGTGTTCTGCTTCACCGACATGATGGCGTCGGGCGCGATGCGCGTCGCGCACGACGAGGGCCTGGC
GATTCCGGCCGACCTCGCGGTGGTCGGCTTCGACGACATCCAGGAGGCGCGGTACATGGTGCCGTCGCTGACCAGCGTGG
CGCCCGACAAGCAGGAGCTGGCCAGGCTGGCGGTGAAGGCGCTGCTGGCGCGGATCGAGGGCCCGGCGGAGGCCCCGCCG
ACGACGCTGCTGGCGCCCTACGAGCTGGCGCTGCGCGAGTCGAGCGCCCTGCCGCAGGACCGGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.994

100

0.374
  cytR Vibrio parahaemolyticus RIMD 2210633

36.337

100

0.365

Multiple sequence alignment