Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AA958_RS05075 Genome accession   NZ_CP011492
Coordinates   1253806..1254501 (-) Length   231 a.a.
NCBI ID   WP_047015024.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248806..1259501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS05040 (AA958_05040) - 1248887..1249414 (+) 528 WP_047015019.1 HNH endonuclease -
  AA958_RS05045 (AA958_05045) - 1249526..1250488 (-) 963 WP_047015020.1 SPFH domain-containing protein -
  AA958_RS05050 (AA958_05050) - 1250571..1250951 (-) 381 WP_047019791.1 NfeD family protein -
  AA958_RS05055 (AA958_05055) - 1251089..1251886 (-) 798 WP_047015021.1 ABC transporter ATP-binding protein -
  AA958_RS05060 (AA958_05060) - 1252002..1252799 (+) 798 WP_047015022.1 hypothetical protein -
  AA958_RS05065 (AA958_05065) - 1252945..1253184 (-) 240 WP_047015023.1 chaplin -
  AA958_RS05070 (AA958_05070) - 1253394..1253639 (-) 246 WP_047019792.1 chaplin -
  AA958_RS05075 (AA958_05075) vraR 1253806..1254501 (-) 696 WP_047015024.1 response regulator transcription factor Regulator
  AA958_RS05080 (AA958_05080) - 1254494..1255660 (-) 1167 WP_047015025.1 GAF domain-containing sensor histidine kinase -
  AA958_RS05085 (AA958_05085) - 1255820..1258396 (-) 2577 WP_253911162.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24580.92 Da        Isoelectric Point: 5.6966

>NTDB_id=128499 AA958_RS05075 WP_047015024.1 1253806..1254501(-) (vraR) [Streptomyces sp. CNQ-509]
MAETGEKQRTAGPDDTAASGRIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGDEGVARTAELVPDVVLMDVKMPGT
DGIEALRRIRESGSAARVLVITSFTEQRTVVPALRAGAAGYVYKDVDPEALAKAIRSVHAGHVLLQQDVAGALLAPEAGG
GPAQGRGTTLTEREREVLALIADGRSNREIARALVVSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLSG

Nucleotide


Download         Length: 696 bp        

>NTDB_id=128499 AA958_RS05075 WP_047015024.1 1253806..1254501(-) (vraR) [Streptomyces sp. CNQ-509]
GTGGCTGAGACGGGCGAGAAGCAGCGGACCGCGGGCCCGGACGACACGGCCGCCTCCGGCCGGATCCGGGTGCTGCTGGT
CGACGACCACCAGGTCGTACGGCGCGGGCTGCGCACCTTCCTGGAGGTGCAGGACGACATCGAGGTCGTCGGCGAGGCCG
CCGACGGGGACGAGGGCGTGGCCCGTACCGCCGAGCTGGTGCCCGACGTGGTCCTCATGGACGTGAAGATGCCCGGCACC
GACGGCATCGAGGCGCTGCGCCGCATCCGTGAGTCCGGCAGCGCGGCGCGCGTGCTGGTCATCACCAGCTTCACCGAGCA
GCGCACCGTCGTCCCCGCACTGCGCGCCGGCGCCGCGGGCTACGTCTACAAGGACGTCGACCCCGAGGCGCTGGCCAAGG
CGATCCGCTCGGTGCACGCCGGGCATGTGCTGCTCCAGCAGGACGTCGCCGGGGCGCTGCTGGCGCCGGAGGCCGGCGGC
GGCCCCGCGCAGGGCCGGGGGACGACGCTGACCGAGCGCGAGCGCGAGGTGCTGGCGCTGATCGCAGACGGCCGCTCGAA
CCGGGAGATCGCCCGCGCCCTCGTGGTCTCGGAGAAGACCGTGAAGACGCACGTGTCGAACATCCTGATGAAGCTCGACC
TGGCGGACCGTACGCAGGCTGCCCTCTGGGCCGTACGCCACGGCCTGAGCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-136)

Bacterial regulatory proteins, luxR family (GerE)

(169-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.712

90.043

0.403

Multiple sequence alignment