Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AS54_RS07660 Genome accession   NZ_CP009318
Coordinates   1313307..1313630 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus 03BB102     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308307..1318630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS54_RS07635 (AS54_1368) - 1308548..1309834 (+) 1287 WP_000245999.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AS54_RS07640 (AS54_1369) sipW 1310029..1310598 (+) 570 WP_000767810.1 signal peptidase I SipW -
  AS54_RS07645 (AS54_1370) - 1310659..1311249 (+) 591 WP_000172842.1 TasA family protein -
  AS54_RS07650 (AS54_1371) - 1311405..1312211 (+) 807 WP_000917467.1 DUF4047 domain-containing protein -
  AS54_RS07655 (AS54_1372) calY 1312636..1313229 (+) 594 WP_000053735.1 biofilm matrix protein CalY -
  AS54_RS07660 (AS54_1373) sinR 1313307..1313630 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  AS54_RS07665 - 1313710..1313844 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  AS54_RS07670 (AS54_1374) inhA1 1314188..1316575 (+) 2388 WP_001035929.1 M6 family metalloprotease immune inhibitor InhA1 -
  AS54_RS07675 (AS54_1375) - 1316747..1318114 (+) 1368 WP_000116803.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=128480 AS54_RS07660 WP_000578878.1 1313307..1313630(-) (sinR) [Bacillus cereus 03BB102]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=128480 AS54_RS07660 WP_000578878.1 1313307..1313630(-) (sinR) [Bacillus cereus 03BB102]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment