Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AA974_RS02585 Genome accession   NZ_CP011487
Coordinates   519599..521119 (+) Length   506 a.a.
NCBI ID   WP_064433298.1    Uniprot ID   -
Organism   Helicobacter pylori strain PNG84A     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 514599..526119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA974_RS02555 (AA974_02570) moaC 514748..515223 (+) 476 Protein_501 cyclic pyranopterin monophosphate synthase MoaC -
  AA974_RS02560 (AA974_02575) hpaA 515341..516123 (+) 783 WP_064433294.1 flagellar sheath lipoprotein HpaA -
  AA974_RS02565 (AA974_02580) - 516152..516988 (+) 837 WP_064433295.1 outer membrane protein -
  AA974_RS02570 (AA974_02585) tig 517101..518456 (+) 1356 WP_064433296.1 trigger factor -
  AA974_RS02575 (AA974_02590) clpP 518477..519064 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  AA974_RS02580 (AA974_02595) def 519069..519593 (+) 525 WP_064433297.1 peptide deformylase -
  AA974_RS02585 (AA974_02600) comM 519599..521119 (+) 1521 WP_064433298.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AA974_RS02590 (AA974_02605) - 521144..523204 (+) 2061 WP_064433299.1 heavy metal translocating P-type ATPase -
  AA974_RS02595 (AA974_02610) - 523250..524461 (+) 1212 WP_064433300.1 restriction endonuclease subunit S -
  AA974_RS08185 - 524559..524684 (+) 126 WP_268864598.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57188.14 Da        Isoelectric Point: 8.3913

>NTDB_id=128470 AA974_RS02585 WP_064433298.1 519599..521119(+) (comM) [Helicobacter pylori strain PNG84A]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKHPHAKVIAPKANEELFALIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEATLIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCSLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=128470 AA974_RS02585 WP_064433298.1 519599..521119(+) (comM) [Helicobacter pylori strain PNG84A]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTACCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTTCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCCGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATTGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAATGGTTTGCTTTTGGGGAATTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTGCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCATTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCA
CCTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTCAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTGGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCTCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAAGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGA
ACGATTGCGGATTTAAACGCTTGTGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTCAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment