Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AA974_RS01575 Genome accession   NZ_CP011487
Coordinates   326052..327977 (-) Length   641 a.a.
NCBI ID   WP_064433132.1    Uniprot ID   -
Organism   Helicobacter pylori strain PNG84A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 321052..332977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA974_RS01565 (AA974_01585) - 321179..323704 (-) 2526 WP_064433130.1 DNA translocase FtsK -
  AA974_RS01570 (AA974_01590) - 323701..326055 (-) 2355 WP_064433131.1 PD-(D/E)XK nuclease family protein -
  AA974_RS01575 (AA974_01595) recP/tkt 326052..327977 (-) 1926 WP_064433132.1 transketolase Machinery gene
  AA974_RS01580 (AA974_01600) - 328024..328866 (-) 843 WP_064433133.1 bifunctional riboflavin kinase/FAD synthetase -
  AA974_RS01585 (AA974_01605) - 328832..329539 (-) 708 WP_064433134.1 TlyA family RNA methyltransferase -
  AA974_RS01590 (AA974_01610) - 329539..330054 (-) 516 WP_064433135.1 hypothetical protein -
  AA974_RS01595 (AA974_01615) pyrB 330121..331044 (+) 924 WP_064433136.1 aspartate carbamoyltransferase -
  AA974_RS01600 (AA974_01620) hofB 331341..332780 (+) 1440 WP_064433137.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70644.04 Da        Isoelectric Point: 6.8077

>NTDB_id=128463 AA974_RS01575 WP_064433132.1 326052..327977(-) (recP/tkt) [Helicobacter pylori strain PNG84A]
MRFNNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLRLNNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPV
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKRSKENARINPNESFVISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHVLKDFDFSAINYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPVEQLSHLRALPNFYAFRPS
DAFENIACMQVALSLSAPSGLILSRQNLPVLDEISKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKILERENIPT
QVVSAPCFDLLIEQEESYLKELFKGKVLMIEASRAIEWYRFADKIICMDSFGSSAKGDKLFEKFGFSVENITTQAKKLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=128463 AA974_RS01575 WP_064433132.1 326052..327977(-) (recP/tkt) [Helicobacter pylori strain PNG84A]
ATGCGATTTAATAACGCTGACTTAGAACGATTGAAAAGCATGGCTAACACGCTTCGCTTTTTGTGCGCAGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGGTTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTCAACCTCA
ACCCCACTAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGTGGAGGGCATGCGAGTGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGATTTGATTTGAGTTTGGAAGATTTGAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
TGAATTACACCACACCGAAGGCATTGAGATCACAACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGATAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTTCGCCTTAATAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATTAATATTAGTTTTAGCGAACAGGTTAAAACGCGTTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCGTG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
CAAAGAAGTGTTAAAACGATCCAAAGAAAACGCTCGAATCAATCCTAATGAAAGCTTTGTAATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGAGGCGTTAGTTTAGAGGCCTTATGGGAAAAATCTTTAAGCCCTAAAGCAAAAGAA
AAGATTCATGTGTTAAAGGATTTTGATTTTAGTGCCATCAATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCACTAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAAGGCTTTTTAGGGGGGAGTGCGGATTTAGCCCCAT
CCAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT
AATGCCAAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGAGCCACGCACCAACCCGTAGAGCAGTTGAGCCATTTACGCGCCTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATATAGCTTGCATGCAAGTAGCGTTAAGTTTGAGTGCTCCTAGCGGGCTGATTCTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGATTTCTAAAGAGCAGGTTTTAAAAGGTGCATATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTAGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCACCTTGCTTTGATTTATTGATAGAGCAAGAAGAAAGCTATCTTAAAGAACTCTTTAAGGGTAAAGT
CTTAATGATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTTGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTTAGCGTTGAAAACATCACCACTCAAGCTAAAAAGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.707

100

0.413

Multiple sequence alignment