Detailed information NTG0128458

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AA974_RS01135
• Genome accession: NZ_CP011487
• Coordinates: 230070..232640 (+)
• Length: 856 a.a.
• NCBI ID: WP_064433062.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PNG84A
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 225070..237640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA974_RS01110 (AA974_01125)	-	225355..226013 (+)	659	Protein_214	MotE family protein	-
AA974_RS01115 (AA974_01130)	rseP	226013..227065 (+)	1053	WP_154815457.1	RIP metalloprotease RseP	-
AA974_RS01120 (AA974_01135)	xseA	227078..228340 (+)	1263	WP_064433059.1	exodeoxyribonuclease VII large subunit	-
AA974_RS01125 (AA974_01140)	-	228547..229242 (+)	696	WP_064433060.1	BsaWI family type II restriction enzyme	-
AA974_RS01130 (AA974_01145)	-	229239..229997 (+)	759	WP_064433061.1	DNA-methyltransferase	-
AA974_RS01135 (AA974_01150)	clpC	230070..232640 (+)	2571	WP_064433062.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AA974_RS01140 (AA974_01155)	-	232698..233417 (+)	720	WP_064433063.1	cytochrome c biogenesis protein CcdA	-
AA974_RS01145 (AA974_01160)	-	233427..234563 (+)	1137	WP_064433064.1	amidohydrolase family protein	-
AA974_RS01150 (AA974_01165)	mqnF	234548..235777 (+)	1230	WP_064433065.1	aminofutalosine deaminase	-
AA974_RS01155 (AA974_01170)	-	235837..236079 (+)	243	WP_064433066.1	nuclease	-
AA974_RS01160 (AA974_01175)	miaB	236089..237408 (+)	1320	WP_080470978.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96514.52 Da
• Isoelectric Point: 6.3262

>NTDB_id=128458 AA974_RS01135 WP_064433062.1 230070..232640(+) (clpC) [Helicobacter pylori strain PNG84A]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKFAKVSQINK
QNIQLNQALIQSLENAQGLMAKIGDSFIAVDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGATIQDKNDDSNLESLE
KFGIDLTQKALDNKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSTNVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSGLKEEKIQLEVQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQKAGEIEYSKIPENKKKEEELQHKWEIMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEADKQKAVKESLRQFFKPEFLNRLDEIISFNALDSHAIAKIVGILFENIQKKALERGINITLDEEAKAL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVEDNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=128458 AA974_RS01135 WP_064433062.1 230070..232640(+) (clpC) [Helicobacter pylori strain PNG84A]
ATGAATTTATTTGAAAAAATGACTGACCAGTTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCTTTACACCATAAAAA
CGCTGAAGTAACGCCCTTACACATGCTCTTTGTCATGCTTAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATAGGCGATTCTTT
TATCGCTGTAGATGTGTATCTTTTGGCGAATATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTGAGAAAAGGCGCGACTATCCAAGATAAGAACGATGATTCTAATTTAGAAAGTTTAGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGACAATAAGCTGGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAGGGTTTAGCCCAGCGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCATCGCTTTAGATTTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGTTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CACGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCTGCGCTCGCTAGGGGGGAATTACACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAATATTTT
GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAAATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACCATCAACGACTCTGCGCTCATAGCGAGTGCCAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTGCCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTTTCTAGCGTTAAGCGCTCCATTCAAAGACTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGGTTTGAAAGAAGAAAAAATCC
AATTAGAAGTGCAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAAAAAGCGGGTGAAATTGAATATTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAGATCATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCAGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGCTCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCTGGGCTTAGCGATAGCAATAAGCCCATAGGGAGTTTTCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTGATAAGAATTGACATGAGCGAATACCTAGAAAAG
CATGCCATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACAGAAGCGGTGCG
CAGGAAGCCTTATAGCGTGGTGTTATTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTACAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGAGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGTGCGCTTTTAGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGGTTAAGGAGAGCTTGAGGCAATTTTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTATCGCTAAGATCGTGG
GGATACTTTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGCGTTG
ATCGCAGAAGCGGGATTTGACAGATTCTATGGCGCTAGACCCTTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTGGAGGATAAAATTAAAGAGAATGACAGCGTGGCATTTGTGGTAGAAGATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• AAA lid domain (AAA_lid_9) (339-440)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.299	100	0.442
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.183	86.098	0.389