Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AA977_RS05425 Genome accession   NZ_CP011486
Coordinates   1152235..1153284 (+) Length   349 a.a.
NCBI ID   WP_064434873.1    Uniprot ID   -
Organism   Helicobacter pylori strain K26A1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1147235..1158284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS05410 (AA977_05490) - 1147809..1149632 (+) 1824 WP_064434870.1 hypothetical protein -
  AA977_RS05415 (AA977_05495) asd 1149818..1150858 (-) 1041 WP_064434871.1 aspartate-semialdehyde dehydrogenase -
  AA977_RS05420 (AA977_05500) hisS 1150845..1152173 (-) 1329 WP_064434872.1 histidine--tRNA ligase -
  AA977_RS05425 (AA977_05505) waaF 1152235..1153284 (+) 1050 WP_064434873.1 lipopolysaccharide heptosyltransferase II Regulator
  AA977_RS05430 (AA977_05510) - 1153455..1153673 (-) 219 WP_000744170.1 hypothetical protein -
  AA977_RS05435 (AA977_05515) - 1153894..1154883 (+) 990 WP_064434874.1 aldo/keto reductase -
  AA977_RS07860 - 1155003..1155155 (+) 153 WP_154811940.1 hypothetical protein -
  AA977_RS05440 (AA977_05520) fusA 1155367..1157445 (-) 2079 WP_064434875.1 elongation factor G -
  AA977_RS05445 (AA977_05525) rpsG 1157457..1157924 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39323.97 Da        Isoelectric Point: 9.5187

>NTDB_id=128442 AA977_RS05425 WP_064434873.1 1152235..1153284(+) (waaF) [Helicobacter pylori strain K26A1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAYFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDMAIALNNHFYSAFLLYATKTPVRIGFAQFFRSFFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWLASYYAEVATTLLEKGYEIYFFGAKEDAIVSEGILKSVKGLLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAAGTQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCSPCKKRVCP
LKNERNHLCMKSITPLEVLQAASTLLEEG

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=128442 AA977_RS05425 WP_064434873.1 1152235..1153284(+) (waaF) [Helicobacter pylori strain K26A1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATGGCTATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCAACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGCTCTTTTTTCCTTAGCCACGCAATAACTGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAATATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGGTGGTTGGCTTCTTATTACGCTGAAGTCGCCACTACTTTGTTAGAAAAAGGGTATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGGAATTTTAAAATCCGTTAAAGGCTTGTTGAAAAACCCCTTATTATTCCAT
AACGCTTATAATCTGTGCGGAAAAACCAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATCTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTAGCCCCTATAAAGCCCAAAAAGCCATTGTATTAAACCATCATTTAAGCTGTTCGCCTTGCAAAAAACGAGTCTGCCCC
TTAAAGAATGAAAGAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTTCCACGCTTTTAGA
AGAGGGTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367