Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AA977_RS03650 Genome accession   NZ_CP011486
Coordinates   777292..778812 (-) Length   506 a.a.
NCBI ID   WP_064434626.1    Uniprot ID   -
Organism   Helicobacter pylori strain K26A1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 772292..783812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS03640 (AA977_03700) - 773947..775161 (-) 1215 WP_064434624.1 restriction endonuclease subunit S -
  AA977_RS03645 (AA977_03705) - 775208..777268 (-) 2061 WP_064434625.1 heavy metal translocating P-type ATPase -
  AA977_RS03650 (AA977_03710) comM 777292..778812 (-) 1521 WP_064434626.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AA977_RS03655 (AA977_03715) def 778815..779342 (-) 528 WP_064434627.1 peptide deformylase -
  AA977_RS03660 (AA977_03720) clpP 779347..779934 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  AA977_RS03665 (AA977_03725) tig 779955..781310 (-) 1356 WP_064434628.1 trigger factor -
  AA977_RS03670 (AA977_03730) - 781423..782259 (-) 837 WP_064434629.1 outer membrane protein -
  AA977_RS03675 (AA977_03735) hpaA 782281..783063 (-) 783 WP_064434630.1 flagellar sheath lipoprotein HpaA -
  AA977_RS03680 (AA977_03740) moaC 783180..783656 (-) 477 WP_064434631.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57270.29 Da        Isoelectric Point: 8.3963

>NTDB_id=128434 AA977_RS03650 WP_064434626.1 777292..778812(-) (comM) [Helicobacter pylori strain K26A1]
MINTIFCATMQKGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELSAKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKAHTHIKNLPFETIEIHHKEYYFSDTYALDFKEVRGQAIAKEAALIASAGFHNLLLEGSPGCGKSMIVNR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GSYKDAPSHSWTSKEMHQLVLLAFKQQKLRKQSVFNGKLNEEQIERFCPLNFEAQKLLEQAAERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=128434 AA977_RS03650 WP_064434626.1 777292..778812(-) (comM) [Helicobacter pylori strain K26A1]
ATGATTAACACGATATTTTGCGCGACCATGCAAAAGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTACCGGCGTTTGTGATTTCAGGTCTTGCTAACAATTCTATCCAAGAAGCCAAGCAGCGAGTCCAATCAGCCTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCGCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GACTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTAAGCGCTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCAAAAA
TCATTGCACCTAAAGCGAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCCTTAGAAATCTTGCAAAACCCTGAAATCAAAGCGCACACCCACATTAAAAACCTCCCTTTTGAAACGATAGAAATCCA
CCATAAAGAGTATTATTTTTCAGACACCTACGCTTTAGATTTTAAAGAAGTTAGGGGGCAAGCTATCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCCGGGTTTCATAACCTGCTTTTAGAAGGAAGTCCAGGGTGCGGTAAAAGCATGATCGTTAATCGC
ATGCGTTATATTTTACCTCCCTTAAGTTTGAATGAAATCCTAGAAGCCACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGAAGCTTTAGAAACCCGCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCATTGGCACATAACGGCATGCTTTTTTTTGACGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTAAGAGAGCCTTTGGAAAACAATAAATTAGTGATCTCACGAGTGCATAGTAAGATTGAATACGAAAC
CTCTTTTTTGTTTGTAGGGGCTCAAAACCCTTGTTTGTGTGGGAATTTACTCAGCACCACTAAAGCATGCCGTTGTCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAGCTATAAAGACGCGCCGTCGCACTCTTGGACTTCAAAAGAAATGCACCAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGAAAACAAAGCGTTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTGGAGCAGGCGGCTGAAAGGTTTAATCTGTCCATGCGCTCTATCAATAAAGTCAAAAAGGTCGCTAGA
ACGATTGCAGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAAATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

93.874

100

0.939
  comM Acinetobacter baylyi ADP1

35.742

100

0.362

Multiple sequence alignment