Detailed information NTG0128422

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AA977_RS01290
• Genome accession: NZ_CP011486
• Coordinates: 267617..270187 (+)
• Length: 856 a.a.
• NCBI ID: WP_064434280.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain K26A1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 262617..275187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA977_RS01260 (AA977_01285)	xseA	262921..264183 (+)	1263	WP_064434275.1	exodeoxyribonuclease VII large subunit	-
AA977_RS01265 (AA977_01290)	-	264199..265362 (-)	1164	WP_064434276.1	site-specific DNA-methyltransferase	-
AA977_RS01270 (AA977_01295)	-	265355..265969 (-)	615	WP_033749907.1	hypothetical protein	-
AA977_RS01280 (AA977_01305)	-	266121..266788 (+)	668	Protein_249	BsaWI family type II restriction enzyme	-
AA977_RS01285 (AA977_01310)	-	266785..267543 (+)	759	WP_064434279.1	site-specific DNA-methyltransferase	-
AA977_RS01290 (AA977_01315)	clpC	267617..270187 (+)	2571	WP_064434280.1	AAA family ATPase	Regulator
AA977_RS01295 (AA977_01320)	-	270237..270956 (+)	720	WP_064434281.1	cytochrome c biogenesis protein CcdA	-
AA977_RS01300 (AA977_01325)	-	270966..272099 (+)	1134	WP_064435171.1	amidohydrolase family protein	-
AA977_RS01305 (AA977_01330)	mqnF	272087..273313 (+)	1227	WP_064434282.1	aminofutalosine deaminase	-
AA977_RS01310 (AA977_01335)	-	273653..273895 (+)	243	WP_000780064.1	nuclease	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96690.50 Da
• Isoelectric Point: 5.8811

>NTDB_id=128422 AA977_RS01290 WP_064434280.1 267617..270187(+) (clpC) [Helicobacter pylori strain K26A1]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLSAMLNNSQGILVQALQKMSVDIPALRLSVQSELNKFAKVSQISK
QNIQLNQALIESFENAQGLMAKTGDSFIAVDVYLVANMSLFESVLKPYLDTKELQKTLEFLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPTTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIKLEAQFENEKEVFKEISRLKMEMENLK
KEAERFKRNGDYQQAAEIEYSKIPENEKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGVLLEEGLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENIQKKALERGINITLDEKAKEL
IAEVGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVVFVVENNEIVPKIQ

Nucleotide

• Length: 2571 bp

>NTDB_id=128422 AA977_RS01290 WP_064434280.1 267617..270187(+) (clpC) [Helicobacter pylori strain K26A1]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCACAAAAA
CGCTGAAGTAACGCCCTTACACATGCTTTCTGCAATGCTTAATAATTCCCAAGGCATTCTCGTTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCCAGCTTTAAGGCTTAGCGTTCAAAGCGAATTAAATAAGTTTGCTAAAGTTTCACAAATCAGCAAA
CAAAATATCCAATTAAACCAAGCTTTGATAGAAAGTTTTGAAAACGCTCAAGGTTTGATGGCTAAAACGGGCGATTCTTT
CATTGCTGTAGATGTGTATCTTGTGGCTAACATGAGTCTTTTTGAAAGCGTTTTAAAGCCCTATTTAGACACTAAAGAAT
TGCAAAAAACTTTAGAATTTTTAAGAAAAGGCAGAACTATTCAGGATAAAAACGATGATTCTAATTTAGAAAGTTTAGAA
AAATTTGGCATTGATTTGACGCAAAAAGCTTTAGAAAATAAACTCGATCCGGTGATCGGAAGAGATGAAGAAATCATTCG
CATGATGCAAATTCTGATCAGAAAAACAAAAAATAACCCTATTTTATTGGGCGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAGGGGTTAGCCCAACGCATTGTCAATAAAGAAGTGCCTACAACGCTTTTAAACAAACGAGTCATCGCTTTAGATTTA
AGCTTATTAGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGTTTGAAAAAGGTGATTGAAGAAGTTAAAAAGAG
CGCGAATGTGATCTTATTCATTGATGAAATCCACACGATTGTGGGGGCTGGGGCTAGTGAAGGGGGCATGGATGCGGCGA
ATATTTTAAAACCGGCTCTAGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTCTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT
AAGGGGGTTGAAAGAAACTTTAGAAACGCACCATAATATCACCATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CCAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTGAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAACAAAGAGAGCAACCACAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCA
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAATTTGAAA
AAAGAGGCTGAAAGGTTTAAACGCAATGGGGATTACCAACAAGCGGCTGAAATTGAATACTCTAAAATCCCTGAAAATGA
AAAGAAAGAAGAAGAATTGCAACACAAATGGGAAGCGATGCAACAAAATGGTGCACTTTTGCAAAACGCTTTAACCGAAA
ACAATATCGCTGAAATCGTGAGCCAATGGACGCACATCCCGGTTCAAAAAATGCTCCAAAGCGAAAAGAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGGGTGGTGGGGCAAGAAAAAGCGCTCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGTAACAAGCCCATAGGGAGTTTTCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAG
CATGCTATAAGTCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCTTATAGCGTGGTGTTATTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT
TAGATGAGGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTC
GCTAGCGGTGTGCTTTTAGAAGAGGGTTTGAGTGAAGCCGATAAACAAAAAGCCATTAAAGAGAGTTTGAGACAATTTTT
CAAGCCAGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCGCTAGATAGCCATGCCATTATTAATATCGTGG
GGATACTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGTATTAATATTACTTTAGATGAAAAGGCAAAGGAATTG
ATCGCCGAAGTGGGGTTTGACAGATTCTATGGCGCTAGACCACTAAAACGCGCGTTATACGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAAGATAAAATCAAAGAAAATGATAGCGTGGTGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AAATTCAGTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-843)

• AAA lid domain (AAA_lid_9) (339-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.726	100	0.436
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.619	100	0.426