Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AA973_RS05315 Genome accession   NZ_CP011485
Coordinates   1108341..1109390 (+) Length   349 a.a.
NCBI ID   WP_064437925.1    Uniprot ID   -
Organism   Helicobacter pylori strain ausabrJ05     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103341..1114390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS05300 (AA973_05335) - 1103904..1105727 (+) 1824 WP_064437922.1 hypothetical protein -
  AA973_RS05305 (AA973_05340) asd 1105924..1106964 (-) 1041 WP_064437923.1 aspartate-semialdehyde dehydrogenase -
  AA973_RS05310 (AA973_05345) hisS 1106951..1108279 (-) 1329 WP_064437924.1 histidine--tRNA ligase -
  AA973_RS05315 (AA973_05350) waaF 1108341..1109390 (+) 1050 WP_064437925.1 lipopolysaccharide heptosyltransferase II Regulator
  AA973_RS07970 - 1109527..1109655 (-) 129 WP_328287330.1 hypothetical protein -
  AA973_RS05320 (AA973_05355) fusA 1110197..1112275 (-) 2079 WP_015429323.1 elongation factor G -
  AA973_RS05325 (AA973_05360) rpsG 1112287..1112754 (-) 468 WP_015086161.1 30S ribosomal protein S7 -
  AA973_RS05330 (AA973_05365) rpsL 1112770..1113177 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39487.22 Da        Isoelectric Point: 9.5543

>NTDB_id=128401 AA973_RS05315 WP_064437925.1 1108341..1109390(+) (waaF) [Helicobacter pylori strain ausabrJ05]
MSANAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNARFILVGPQITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIIAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=128401 AA973_RS05315 WP_064437925.1 1108341..1109390(+) (waaF) [Helicobacter pylori strain ausabrJ05]
ATGAGTGCAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCAATCATTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTGTTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGTAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.628

98.567

0.361