Detailed information NTG0128382

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AA973_RS01295
• Genome accession: NZ_CP011485
• Coordinates: 258749..261319 (+)
• Length: 856 a.a.
• NCBI ID: WP_064437301.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ausabrJ05
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 253749..266319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA973_RS01270 (AA973_01275)	rseP	253954..255006 (+)	1053	WP_154811888.1	RIP metalloprotease RseP	-
AA973_RS01275 (AA973_01280)	xseA	255019..256281 (+)	1263	WP_064437299.1	exodeoxyribonuclease VII large subunit	-
AA973_RS01280 (AA973_01285)	-	256300..256911 (-)	612	Protein_248	DNA methyltransferase	-
AA973_RS01285 (AA973_01290)	-	257233..257921 (+)	689	Protein_249	BsaWI family type II restriction enzyme	-
AA973_RS01290 (AA973_01295)	-	257918..258676 (+)	759	WP_064437300.1	DNA-methyltransferase	-
AA973_RS01295 (AA973_01300)	clpC	258749..261319 (+)	2571	WP_064437301.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AA973_RS01300 (AA973_01305)	-	261376..262095 (+)	720	WP_064437302.1	cytochrome c biogenesis protein CcdA	-
AA973_RS01305 (AA973_01310)	-	262105..263241 (+)	1137	WP_064437303.1	amidohydrolase family protein	-
AA973_RS01310 (AA973_01315)	mqnF	263226..264455 (+)	1230	WP_064437304.1	aminofutalosine deaminase	-
AA973_RS01315 (AA973_01320)	-	264516..264758 (+)	243	WP_064437305.1	nuclease	-
AA973_RS01320 (AA973_01325)	miaB	264768..266090 (+)	1323	WP_080471597.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96571.51 Da
• Isoelectric Point: 6.4857

>NTDB_id=128382 AA973_RS01295 WP_064437301.1 258749..261319(+) (clpC) [Helicobacter pylori strain ausabrJ05]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKFAKVSQINK
QNIQLNQALIQSLENAQGLMAKTGDSFIAVDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGATIQDKNDDSNLESLE
KFGIDLTQKALDNKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKERKIQLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWESMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGVLLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIAKIVGILFENIQKKALERGIHITLDEEAKAL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=128382 AA973_RS01295 WP_064437301.1 258749..261319(+) (clpC) [Helicobacter pylori strain ausabrJ05]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCTTTACACCATAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTTAATAACTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA
TGTCTGTAGATATTCAAGCTTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAACGGGCGATTCTTT
TATCGCTGTAGATGTGTATCTTTTGGCGAATATGAGTCTCTTTGAAAGCGTCTTGAAGCCCTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCGCGACTATCCAAGATAAAAACGATGATTCTAATTTGGAAAGTTTAGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGACAATAAGCTGGATCCGGTGATCGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATCAGAAAAACAAAAAATAACCCCATTTTATTGGGTGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAGGGTTTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTGATCGCTTTAGATCTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGTTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGAGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTACACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGTTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGGCTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCTAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAAGAAAAATCC
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGGGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAACATAAATGGGAATCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATTGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTAGGGCAAGAAAAAGCGCTCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGTCTTAGCGATAGCAATAAGCCCATAGGGAGTTTTCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTGATAAGAATTGACATGAGCGAGTACATGGAAAAG
CATGCCATAAGCCGCCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACAGAAGCGGTGCG
TAGAAAGCCTTATAGCGTGGTGTTATTAGATGAAGTGGAAAAAGCCCATCCGGATGTCTTTAACCTCTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTAAGGGTGGATTTCAAAAACACGATTTTGATTTTAACTAGCAATGTG
GCTAGCGGCGTGCTTTTAGAAGAAAACTTGAGTGAAGCCGACAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTTTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCTCTAGATAGTCATGCTATCGCTAAGATTGTGG
GGATACTTTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTCATATAACCCTAGATGAAGAGGCAAAAGCGTTG
ATCGCAGAAGCAGGATTTGACAGATTTTATGGCGCTAGACCCTTAAAGCGCGCACTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCATTTGTGGTGGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• AAA lid domain (AAA_lid_9) (339-440)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.841	100	0.437
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.664	86.215	0.394
clpE	Streptococcus mutans UA159	43.954	82.126	0.361