Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AA973_RS00525 Genome accession   NZ_CP011485
Coordinates   106353..106820 (-) Length   155 a.a.
NCBI ID   WP_064437180.1    Uniprot ID   -
Organism   Helicobacter pylori strain ausabrJ05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 101353..111820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS00510 (AA973_00515) - 101759..102541 (-) 783 WP_064437177.1 glycosyltransferase family 2 protein -
  AA973_RS00515 (AA973_00520) tlpB 102572..104269 (-) 1698 WP_064437178.1 methyl-accepting chemotaxis protein TlpB -
  AA973_RS00520 (AA973_00525) - 104474..106219 (-) 1746 WP_064437179.1 bifunctional metallophosphatase/5'-nucleotidase -
  AA973_RS00525 (AA973_00530) luxS 106353..106820 (-) 468 WP_064437180.1 S-ribosylhomocysteine lyase Regulator
  AA973_RS00530 (AA973_00535) - 106852..107994 (-) 1143 WP_064437181.1 cystathionine gamma-synthase -
  AA973_RS00535 (AA973_00540) - 108015..108932 (-) 918 WP_064437182.1 O-acetylserine-dependent cystathionine beta-synthase -
  AA973_RS00540 (AA973_00545) - 109046..109624 (+) 579 WP_064437183.1 hypothetical protein -
  AA973_RS00545 (AA973_00550) dnaK 109867..111729 (-) 1863 WP_064437184.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17713.19 Da        Isoelectric Point: 6.8403

>NTDB_id=128378 AA973_RS00525 WP_064437180.1 106353..106820(-) (luxS) [Helicobacter pylori strain ausabrJ05]
MKTQKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=128378 AA973_RS00525 WP_064437180.1 106353..106820(-) (luxS) [Helicobacter pylori strain ausabrJ05]
ATGAAAACCCAAAAAATGAATGTAGAAAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTACACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTACCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCAGCTAACCACACCTTAG
AGGGTGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374