Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AW22_RS24620 Genome accession   NZ_CP009300
Coordinates   4484058..4484342 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus D17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4479058..4489342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW22_RS24605 (AW22_4674) rnmV 4479880..4480437 (-) 558 WP_000692830.1 ribonuclease M5 -
  AW22_RS24610 (AW22_4675) - 4480652..4481419 (-) 768 WP_000895823.1 TatD family hydrolase -
  AW22_RS24615 (AW22_4676) metG 4481585..4483567 (-) 1983 WP_000134147.1 methionine--tRNA ligase -
  AW22_RS24620 (AW22_4677) abrB 4484058..4484342 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AW22_RS24625 (AW22_4678) rsmI 4484363..4485238 (-) 876 WP_042513324.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AW22_RS24630 (AW22_4679) - 4485207..4485497 (-) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  AW22_RS24635 (AW22_4680) - 4485484..4486224 (-) 741 WP_001055350.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AW22_RS24640 (AW22_4681) yabA 4486345..4486695 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  AW22_RS24645 (AW22_4682) - 4486710..4487537 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  AW22_RS24650 (AW22_4683) holB 4487543..4488526 (-) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  AW22_RS24655 (AW22_4684) tmk 4488562..4489188 (-) 627 WP_000677233.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=128377 AW22_RS24620 WP_000843036.1 4484058..4484342(+) (abrB) [Bacillus cereus D17]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=128377 AW22_RS24620 WP_000843036.1 4484058..4484342(+) (abrB) [Bacillus cereus D17]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment