Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AW22_RS18160 Genome accession   NZ_CP009300
Coordinates   3244912..3245235 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus D17     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3239912..3250235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW22_RS18145 (AW22_3389) - 3240428..3241795 (-) 1368 WP_042513058.1 aldehyde dehydrogenase -
  AW22_RS18150 (AW22_3390) inhA1 3241967..3244354 (-) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  AW22_RS18155 - 3244698..3244832 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  AW22_RS18160 (AW22_3391) sinR 3244912..3245235 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  AW22_RS18165 (AW22_3392) calY 3245314..3245907 (-) 594 WP_000053735.1 biofilm matrix protein CalY -
  AW22_RS18170 (AW22_3393) - 3246332..3247135 (-) 804 WP_042513059.1 DUF4047 domain-containing protein -
  AW22_RS18175 (AW22_3394) - 3247297..3247884 (-) 588 WP_000172840.1 CalY family protein -
  AW22_RS18180 (AW22_3395) sipW 3247947..3248516 (-) 570 WP_000767813.1 signal peptidase I SipW -
  AW22_RS18185 (AW22_3396) - 3248711..3249997 (-) 1287 WP_042513060.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=128363 AW22_RS18160 WP_000578878.1 3244912..3245235(+) (sinR) [Bacillus cereus D17]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=128363 AW22_RS18160 WP_000578878.1 3244912..3245235(+) (sinR) [Bacillus cereus D17]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment