Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AA976_RS00810 Genome accession   NZ_CP011484
Coordinates   159681..160139 (-) Length   152 a.a.
NCBI ID   WP_033776709.1    Uniprot ID   -
Organism   Helicobacter pylori strain CC33C     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 154681..165139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA976_RS00795 (AA976_00820) - 155083..155865 (-) 783 WP_064436212.1 glycosyltransferase family 2 protein -
  AA976_RS00800 (AA976_00825) tlpB 155896..157593 (-) 1698 WP_064436213.1 methyl-accepting chemotaxis protein TlpB -
  AA976_RS00805 (AA976_00830) - 157802..159547 (-) 1746 WP_064436214.1 bifunctional metallophosphatase/5'-nucleotidase -
  AA976_RS00810 (AA976_00835) luxS 159681..160139 (-) 459 WP_033776709.1 S-ribosylhomocysteine lyase Regulator
  AA976_RS00815 (AA976_00840) - 160177..161319 (-) 1143 WP_064436215.1 cystathionine gamma-synthase -
  AA976_RS00820 (AA976_00845) - 161340..162257 (-) 918 WP_064436216.1 O-acetylserine-dependent cystathionine beta-synthase -
  AA976_RS08575 (AA976_00850) - 162377..162954 (+) 578 Protein_158 hypothetical protein -
  AA976_RS00830 (AA976_00855) dnaK 163201..165063 (-) 1863 WP_064436217.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17356.77 Da        Isoelectric Point: 6.8403

>NTDB_id=128339 AA976_RS00810 WP_033776709.1 159681..160139(-) (luxS) [Helicobacter pylori strain CC33C]
MKMNVESFNLDHTKVKAPYVRIADRKKGANGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRTEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=128339 AA976_RS00810 WP_033776709.1 159681..160139(-) (luxS) [Helicobacter pylori strain CC33C]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACATGCCAAGCC
TGCACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGAATTTAGCGCGCGCTTTTTTGGACAAACGCACTGAGTGGTCTGAAGTGGGAGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

92.763

0.382

Multiple sequence alignment