Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EE66_RS05770 Genome accession   NZ_CP011483
Coordinates   1171014..1171481 (-) Length   155 a.a.
NCBI ID   WP_021300980.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166014..1176481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS05755 (EE66_05750) - 1166401..1167183 (-) 783 WP_064431299.1 glycosyltransferase family 2 protein -
  EE66_RS05760 (EE66_05755) tlpB 1167213..1168910 (-) 1698 WP_064431300.1 methyl-accepting chemotaxis protein TlpB -
  EE66_RS05765 (EE66_05760) - 1169118..1170803 (-) 1686 WP_366663790.1 5'-nucleotidase C-terminal domain-containing protein -
  EE66_RS05770 (EE66_05765) luxS 1171014..1171481 (-) 468 WP_021300980.1 S-ribosylhomocysteine lyase Regulator
  EE66_RS05775 (EE66_05770) - 1171516..1172658 (-) 1143 WP_064431302.1 cystathionine gamma-synthase -
  EE66_RS05780 (EE66_05775) - 1172679..1173596 (-) 918 WP_064431303.1 O-acetylserine-dependent cystathionine beta-synthase -
  EE66_RS05785 (EE66_05780) dnaK 1173853..1175715 (-) 1863 WP_064431304.1 molecular chaperone DnaK -
  EE66_RS05790 (EE66_05785) grpE 1175746..1176321 (-) 576 WP_064431305.1 nucleotide exchange factor GrpE -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17661.16 Da        Isoelectric Point: 6.8403

>NTDB_id=128312 EE66_RS05770 WP_021300980.1 1171014..1171481(-) (luxS) [Helicobacter pylori strain DU15]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=128312 EE66_RS05770 WP_021300980.1 1171014..1171481(-) (luxS) [Helicobacter pylori strain DU15]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTCAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGTAACCATGCTAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGCTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGTGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGTGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374