Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EE66_RS02520 Genome accession   NZ_CP011483
Coordinates   493069..494589 (+) Length   506 a.a.
NCBI ID   WP_064430887.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 488069..499589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS02490 (EE66_02480) moaC 488221..488697 (+) 477 WP_001131556.1 cyclic pyranopterin monophosphate synthase MoaC -
  EE66_RS02495 (EE66_02485) hpaA 488816..489598 (+) 783 WP_064430884.1 flagellar sheath lipoprotein HpaA -
  EE66_RS02500 (EE66_02490) - 489620..490456 (+) 837 WP_064430885.1 outer membrane protein -
  EE66_RS02505 (EE66_02495) tig 490569..491924 (+) 1356 WP_064430886.1 trigger factor -
  EE66_RS02510 (EE66_02500) clpP 491947..492534 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  EE66_RS02515 (EE66_02505) def 492539..493066 (+) 528 WP_001185833.1 peptide deformylase -
  EE66_RS02520 (EE66_02510) comM 493069..494589 (+) 1521 WP_064430887.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EE66_RS02525 (EE66_02515) - 494614..496674 (+) 2061 WP_064430888.1 heavy metal translocating P-type ATPase -
  EE66_RS08785 (EE66_02520) - 496716..497374 (+) 659 Protein_472 restriction endonuclease subunit S -
  EE66_RS02535 (EE66_02525) - 497446..497592 (+) 147 WP_064430889.1 hypothetical protein -
  EE66_RS02540 (EE66_02530) hofF 497673..499172 (-) 1500 WP_064430890.1 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57221.22 Da        Isoelectric Point: 8.3913

>NTDB_id=128295 EE66_RS02520 WP_064430887.1 493069..494589(+) (comM) [Helicobacter pylori strain DU15]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=128295 EE66_RS02520 WP_064430887.1 493069..494589(+) (comM) [Helicobacter pylori strain DU15]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAGATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACATCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCTTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTGAGTCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCTTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCACATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTCAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAGTTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAACATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.204

100

0.366