Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EE66_RS00770 Genome accession   NZ_CP011483
Coordinates   131814..132863 (-) Length   349 a.a.
NCBI ID   WP_064430673.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 126814..137863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS00750 (EE66_00750) rpsL 128033..128440 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  EE66_RS00755 (EE66_00755) rpsG 128456..128923 (+) 468 WP_015086161.1 30S ribosomal protein S7 -
  EE66_RS00760 (EE66_00760) fusA 128935..131013 (+) 2079 WP_000101843.1 elongation factor G -
  EE66_RS00770 (EE66_00770) waaF 131814..132863 (-) 1050 WP_064430673.1 lipopolysaccharide heptosyltransferase II Regulator
  EE66_RS00775 (EE66_00775) hisS 132925..134253 (+) 1329 WP_000632545.1 histidine--tRNA ligase -
  EE66_RS00780 (EE66_00780) asd 134240..135280 (+) 1041 WP_064430674.1 aspartate-semialdehyde dehydrogenase -
  EE66_RS00785 (EE66_00785) - 135716..136966 (+) 1251 WP_064430675.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39553.53 Da        Isoelectric Point: 9.8752

>NTDB_id=128289 EE66_RS00770 WP_064430673.1 131814..132863(-) (waaF) [Helicobacter pylori strain DU15]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAAGAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=128289 EE66_RS00770 WP_064430673.1 131814..132863(-) (waaF) [Helicobacter pylori strain DU15]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCCCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364