Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AA971_RS05480 Genome accession   NZ_CP011482
Coordinates   1145445..1146494 (+) Length   349 a.a.
NCBI ID   WP_064432495.1    Uniprot ID   -
Organism   Helicobacter pylori strain L7     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140445..1151494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS05460 (AA971_05450) pseI 1140584..1141606 (+) 1023 WP_064432492.1 pseudaminic acid synthase -
  AA971_RS05465 (AA971_05455) - 1141807..1142550 (+) 744 WP_064430676.1 carbonic anhydrase -
  AA971_RS05470 (AA971_05460) asd 1143028..1144068 (-) 1041 WP_064432493.1 aspartate-semialdehyde dehydrogenase -
  AA971_RS05475 (AA971_05465) hisS 1144055..1145383 (-) 1329 WP_064432494.1 histidine--tRNA ligase -
  AA971_RS05480 (AA971_05470) waaF 1145445..1146494 (+) 1050 WP_064432495.1 lipopolysaccharide heptosyltransferase II Regulator
  AA971_RS08800 (AA971_05475) - 1146683..1146817 (-) 135 WP_268864589.1 hypothetical protein -
  AA971_RS05490 (AA971_05485) fusA 1147404..1149482 (-) 2079 WP_064432496.1 elongation factor G -
  AA971_RS05495 (AA971_05490) rpsG 1149494..1149961 (-) 468 WP_001254349.1 30S ribosomal protein S7 -
  AA971_RS05500 (AA971_05495) rpsL 1149977..1150384 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39368.12 Da        Isoelectric Point: 9.6620

>NTDB_id=128282 AA971_RS05480 WP_064432495.1 1145445..1146494(+) (waaF) [Helicobacter pylori strain L7]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIECIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=128282 AA971_RS05480 WP_064432495.1 1145445..1146494(+) (waaF) [Helicobacter pylori strain L7]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCTGTTTTCATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACACCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCATTCAAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTGTTTTAGATTTGTTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367

Multiple sequence alignment