Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AA971_RS00480 Genome accession   NZ_CP011482
Coordinates   100627..101094 (-) Length   155 a.a.
NCBI ID   WP_064431808.1    Uniprot ID   -
Organism   Helicobacter pylori strain L7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 95627..106094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS00465 (AA971_00460) - 96034..96816 (-) 783 WP_064431805.1 glycosyltransferase family 2 protein -
  AA971_RS00470 (AA971_00465) tlpB 96847..98544 (-) 1698 WP_064431806.1 methyl-accepting chemotaxis protein TlpB -
  AA971_RS00475 (AA971_00470) - 98757..100442 (-) 1686 WP_412767748.1 bifunctional metallophosphatase/5'-nucleotidase -
  AA971_RS00480 (AA971_00475) luxS 100627..101094 (-) 468 WP_064431808.1 S-ribosylhomocysteine lyase Regulator
  AA971_RS00485 (AA971_00480) - 101132..102274 (-) 1143 WP_064431809.1 cystathionine gamma-synthase -
  AA971_RS00490 (AA971_00485) - 102295..103212 (-) 918 WP_064431810.1 O-acetylserine-dependent cystathionine beta-synthase -
  AA971_RS00495 (AA971_00490) dnaK 103473..105335 (-) 1863 WP_064432808.1 molecular chaperone DnaK -
  AA971_RS00500 (AA971_00495) grpE 105367..105942 (-) 576 WP_064431811.1 nucleotide exchange factor GrpE -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17601.04 Da        Isoelectric Point: 6.3750

>NTDB_id=128259 AA971_RS00480 WP_064431808.1 100627..101094(-) (luxS) [Helicobacter pylori strain L7]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKCAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=128259 AA971_RS00480 WP_064431808.1 100627..101094(-) (luxS) [Helicobacter pylori strain L7]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAACAGCCCAACCAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAATCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCGCAAAATTTAGCACGCGCTTTTTTAGACAAATGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment