Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PBOR_RS25220 Genome accession   NZ_CP009285
Coordinates   5923521..5925281 (+) Length   586 a.a.
NCBI ID   WP_042216440.1    Uniprot ID   -
Organism   Paenibacillus borealis strain DSM 13188     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5918521..5930281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBOR_RS25205 (PBOR_26210) - 5919516..5920580 (-) 1065 WP_042216434.1 suppressor of fused domain protein -
  PBOR_RS25210 (PBOR_26215) - 5920780..5921337 (+) 558 WP_042216436.1 SMI1/KNR4 family protein -
  PBOR_RS37480 - 5921434..5921589 (+) 156 WP_167549570.1 hypothetical protein -
  PBOR_RS25215 (PBOR_26225) rcrP 5921764..5923521 (+) 1758 WP_042216438.1 ABC transporter ATP-binding protein Regulator
  PBOR_RS25220 (PBOR_26230) rcrQ 5923521..5925281 (+) 1761 WP_042216440.1 ABC transporter ATP-binding protein Regulator
  PBOR_RS25225 (PBOR_26235) ppdK 5925395..5928079 (-) 2685 WP_174479833.1 pyruvate, phosphate dikinase -
  PBOR_RS25230 (PBOR_26240) - 5928141..5929565 (-) 1425 WP_042216442.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 63998.13 Da        Isoelectric Point: 6.1921

>NTDB_id=128195 PBOR_RS25220 WP_042216440.1 5923521..5925281(+) (rcrQ) [Paenibacillus borealis strain DSM 13188]
MKTKTKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLLGPDMLSEITDKITAGLAGGIDMDGIAAIGITLVVIYAIS
AVLSLSQGLIMSNITQKVSKKLRTDLAHKMNRLPISYYNKSATGDILSRVTNDVDTIGQAMNQSIGTVVTAVAMFIGSII
MMLRTNVIMTLTAIVATIIGFGLMAVIMKKSQKYFASQQEYLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGLK
NSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLALDGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGGRV
FEFLEEAEMEDESRKENTLATAVGKVKFDQVKFAYENSENLVIKNFSTEVKPGQKVAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGSIKENLIYNQQNITDEKLEEACKAVGLHRFIQSLTDGYDTVLNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHTELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=128195 PBOR_RS25220 WP_042216440.1 5923521..5925281(+) (rcrQ) [Paenibacillus borealis strain DSM 13188]
ATGAAAACCAAGACTAAGGGACAGAATACCTGGAGCAAGCTGCTCCGGTACTGCCGTAAATACGTTCCGGTGATCGTCAT
TGCGCTGATCTGCGCGGCGGCCGGAACTGTGCTCACGCTGCTGGGTCCGGATATGCTCTCCGAAATTACGGACAAAATCA
CAGCCGGTCTCGCGGGCGGGATCGATATGGACGGCATTGCTGCCATCGGCATCACCCTCGTCGTGATCTACGCCATCAGT
GCGGTATTATCGCTCTCGCAGGGCCTGATCATGTCGAATATTACCCAGAAGGTCTCGAAGAAATTAAGAACCGATCTGGC
TCATAAAATGAACCGGCTTCCGATCTCCTACTATAATAAATCGGCCACAGGGGATATCCTCTCCCGGGTAACGAATGATG
TGGATACCATCGGGCAGGCGATGAATCAGAGTATCGGTACGGTCGTGACCGCCGTAGCCATGTTCATCGGTTCGATCATT
ATGATGCTGCGGACCAATGTAATTATGACCCTTACCGCGATCGTAGCAACAATCATCGGTTTCGGCCTGATGGCGGTTAT
TATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAGTATTTGGGCAAAATCAACGGTCATGTTGAGGAAGTCTATA
CCGGACATAATGTTGTAAAAGCCTATAACGGTGAAGCGCAGATGCGCACCACCTTCCAGGAATTGAATCAGGGGCTGAAG
AACAGCGCGTTCAAAGCGCAATTCCTCTCCGGACTGATGCCGCCGCTAATGGGCTTTATCGGTAATCTCGGTTTCGTTGC
CGTTTGTGTCGTTGGGGCTGTACTGGCCTTGGATGGAACTATTTCCTTCGGGGTTATCGTAGCCTTCATTATGTATGTAC
GTTACTTCACCCAGCCGTTATCCCAGATCGCCCAGGCCGCGCAGAACCTGCAATCGGCATCAGCCGCCGGCGGACGCGTG
TTTGAATTCCTCGAAGAAGCAGAAATGGAAGACGAGAGCCGCAAAGAGAACACACTGGCAACTGCGGTAGGCAAAGTAAA
ATTTGACCAGGTGAAATTCGCTTATGAGAATTCCGAGAACCTGGTAATCAAGAACTTCTCGACAGAGGTGAAGCCGGGGC
AAAAGGTGGCCATCGTCGGCCCGACCGGCGCAGGCAAAACCACGCTGGTCAATCTGCTCATCCGGTTCAACGAGCTGACC
GGCGGAGAAATCTACATTGATGACACACCGATCAGCAGCCTGACGAGGGAGAACATCCACGATTTGTTCTGCATGGTGCT
GCAGGATACCTGGCTGTTTGAAGGCTCGATCAAGGAGAACCTGATCTACAATCAGCAGAATATCACGGACGAGAAGCTTG
AAGAAGCCTGCAAGGCCGTTGGCCTGCACCGCTTCATACAATCTTTAACGGACGGATATGATACCGTCCTGAACGATAAG
GTCAACCTGTCCGCCGGCCAGAAGCAGCAGCTGACCATCGCCCGCGCGATGCTGAAGGATGCACCGATGCTCATTCTTGA
TGAAGCTACAAGCTCCGTGGATACCCGGACTGAGCTGCTGATCCAGCAGGCGATGGACCAGCTGATGGAGGGCAGAACCT
CCTTCGTCATCGCCCACCGGTTGTCCACAATCAAGAATGCTGATGTGATTCTCGTCCTGAAGGACGGCGATATCCTGGAA
AGCGGCAGCCATACAGAATTGCTCGCGAAGAACGGATTCTACGCCGAGCTGTACAACAGCCAGTTTGAGCAGGCCTCCTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.766

99.147

0.553

Multiple sequence alignment